BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4418.p (356 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981746|ref|YP_001351981.1| porin [Janthinobacterium sp. Ma... 161 5e-41 gi|152981617|ref|YP_001351980.1| outer membrane porin [Janthinob... 141 6e-35 gi|152981715|ref|YP_001353752.1| porin [Janthinobacterium sp. Ma... 130 1e-31 gi|152981718|ref|YP_001352190.1| porin [Janthinobacterium sp. Ma... 110 2e-25 gi|152981716|ref|YP_001354197.1| porin [Janthinobacterium sp. Ma... 103 1e-23 >gi|152981746|ref|YP_001351981.1| porin [Janthinobacterium sp. Marseille] Length = 395 Score = 161 bits (408), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 120/352 (34%), Positives = 169/352 (48%), Gaps = 23/352 (6%) Query: 20 AGAQAQTSVTVYGLIDTGVEYLNNANAAGNSVVRL-SSGNMNTSRIGFRGSEDLGGGLKA 78 AG Q+++ +YG ID G+ + N G +++ S+G +RIG +G+EDLGGGL A Sbjct: 52 AGTNYQSTINIYGTIDAGIRNVTNTTKNGGDTLKMGSNGEYYNNRIGIKGTEDLGGGLNA 111 Query: 79 IFQLENGFKLDTGGFDGDANQIFNRQSNVGLEGGFGRVVAGRSYSTTYDFIGPFDPMGYS 138 F LE GF TG D +A + FNR S+VG+ G FG + GR S + I +DP Y Sbjct: 112 HFHLETGFNTGTGALDNNAGRFFNRISSVGVAGSFGSIDFGRMPSVSCKTIFAYDPFQYR 171 Query: 139 ANYSWVTSAGATGGRKDGMPTG----------VSNLVKYQGEFSGVKIGAMYGFGEVAGQ 188 V AGA+ G DG G SN V+Y G+F V I A + GEV+G Sbjct: 172 Y-VQIVPLAGASAGNADGNAPGFPWGTIGGTRFSNDVQYIGKFDNVTILAEFSTGEVSGS 230 Query: 189 TSNGAKYGVGLGWGSGPFSLAATYDRN--NSTTTVNTAYDRATSAHLAAGYQLADAWKFN 246 S+G+ VG+ + GPF + A Y R N + T Y + YQ AD + Sbjct: 231 NSSGSAQAVGMTYRPGPFVIGAAYTRQKPNVSITATPEYQQQNQVTFGGAYQ-ADGLRIA 289 Query: 247 LGYRYYKKTLASGATDLRSDFYWGGVSYKFTPAMTVIGAIYYQNIK--NVAKDADPIMYS 304 GY + A + ++ W G SY FTPA++V Y + NV K + ++ Sbjct: 290 GGYINTEADTAVQGINNQAKNSWIGASYDFTPAVSVTTGFYRTTLATGNVEKASRNLLI- 348 Query: 305 LRLKYAMSKRTDLYLSTAYAKAKNNQLVGLSRDDVGFGNSQFGMTMGMQHRF 356 + YA+S RT+LYL A L G G Q G ++G+ H F Sbjct: 349 VGATYALSTRTNLYLGVDRAT-----LGGFVSLTAGAKTRQTGTSIGINHMF 395 >gi|152981617|ref|YP_001351980.1| outer membrane porin [Janthinobacterium sp. Marseille] Length = 364 Score = 141 bits (356), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 130/382 (34%), Positives = 185/382 (48%), Gaps = 44/382 (11%) Query: 1 VQRNHLAASMLAAFATLAAAGAQAQTSVTVYGLIDTGVEYLNNANAAGNSVVRLSSGNMN 60 ++++ LA ++L AFA A AQ+SVTVYG++D G ++++ N AG S + SG + Sbjct: 1 MKKSLLALAVLGAFA----GAASAQSSVTVYGIVDLGFAHVDDGNPAG-SKNGIDSGGQS 55 Query: 61 TSRIGFRGSEDLGGGLKAIFQLENGFKLDTGGFD------------GDANQI--FNRQSN 106 SRIGF+G+EDLG GLKA+FQLE + DTG G AN FNR + Sbjct: 56 ASRIGFKGTEDLGNGLKALFQLEATLQADTGAGFGAAAAPATGFNAGVANNAGGFNRFAT 115 Query: 107 VGLE-GGFGRVVAGRSYSTTYDFIGPFDPMGYSANYSWVTSAGATG------GRKDGMPT 159 VGL+ FG V+ GR S D DP G +++ G GR Sbjct: 116 VGLQSAAFGTVLLGRQTSVIKDAYDQIDPFGDGGTVGAISTVFFNGVLAGDYGR------ 169 Query: 160 GVSNLVKYQG-EFSGVKIGAMYGFGEVAGQTSNGAKYGVGLGWGSGPFSLAATYDRNNST 218 +SN KYQ F G K GA YGFGE G T + YG+GLG+ +GP ++ Y + + Sbjct: 170 -ISNSAKYQSNSFGGFKFGAAYGFGETPGDTGANSNYGLGLGYANGPLNVQFAYHNQDRS 228 Query: 219 TTVNTAYDRATSA--HLAAGYQLADAWKFNLGYRYYKKTLASGATDLRSDFYWGGVSYKF 276 T N + +A L A Y K + Y K + T+++ Y GVS Sbjct: 229 TVANPSVQQAEGKLMLLGATYDFG-VVKLHGAYGDTKLENSVANTEVKYRNYMLGVSAPV 287 Query: 277 TPAMTVIGAIYYQNIKNVAKDADPIMYSLRLKYAMSKRTDLYLSTAYAKAKNNQ--LVGL 334 P I A Y N +AD +++ Y +SKRT+LY T Y+K N+ +GL Sbjct: 288 GPG--TIFASYTANDNRSVDNADAKKFAISYSYDLSKRTNLY--TGYSKTSNDDGSRIGL 343 Query: 335 SRDDVGFGNSQFGMTMGMQHRF 356 + G S +G++H+F Sbjct: 344 NA-GAPVGESASIFNVGIRHKF 364 >gi|152981715|ref|YP_001353752.1| porin [Janthinobacterium sp. Marseille] Length = 327 Score = 130 bits (328), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 118/349 (33%), Positives = 163/349 (46%), Gaps = 29/349 (8%) Query: 11 LAAFATLAA-AGAQ-AQTSVTVYGLIDTGVEYLNNANAAGNSVVRLSSGNMNTSRIGFRG 68 L AF+ LA+ AGA Q+SVTVYG++D G++ NA +V + SGN + SR+GF+G Sbjct: 5 LFAFSMLASMAGATYGQSSVTVYGVVDLGLKI---ENAGNGTVTGIDSGNQSVSRVGFKG 61 Query: 69 SEDLGGGLKAIFQLENGFKLDTGGFDGDANQIFNRQSNVGLEGGFGRVVAGRSYSTTYDF 128 +EDLG GLKA F LE GF D+G DA + FNRQS V L GGFG V GR + + Sbjct: 62 TEDLGNGLKANFVLEAGFNADSGS-QSDATRFFNRQSYVSLAGGFGEVKLGRVQTMVFTN 120 Query: 129 IGPFDPMGYSANYSWVTSAGATGGRKDGMPTGVSNLVKYQ-GEFSGVKIGAMYGFGEVAG 187 FDP + V G R D N V Y +G+ A Y FGEVAG Sbjct: 121 SAVFDPFADTLAGDSVRIFNYGGNRID-------NTVNYSFAAKNGINGQAAYSFGEVAG 173 Query: 188 QTSNGAKYGVGLGWGSGPFSLAATYDRNNSTTTVNTAYDRATSAHLAAGYQLADAWKFNL 247 TS +G+ SGP + TY T D A + + Y F + Sbjct: 174 NTSASRTVAGAIGYASGPLATVLTYQDTKDV----TGNDSAKTTLIGGNYNFGLLQPF-I 228 Query: 248 GYRYYKKTLASGATDLRSDFYWGGVSYKFTPAMTVIGAIYYQNIKNVAKDADPIMYSLRL 307 Y K G D R G+ T A T++ + Y Q V +AD ++ Sbjct: 229 AYAVNK---GFGTLDTRDALL--GLKINLTSADTIMTS-YMQKRDKVIDNADAKQIAIGY 282 Query: 308 KYAMSKRTDLYLSTAYAKAKNNQLVGLSRDDVGFGNSQFGMTMGMQHRF 356 + +S RT+LY T++A+ N+ G + F +G++H+F Sbjct: 283 THNLSVRTNLY--TSWARLSNDDNAAYRVTSAGKTDKLF--NIGIRHKF 327 >gi|152981718|ref|YP_001352190.1| porin [Janthinobacterium sp. Marseille] Length = 364 Score = 110 bits (274), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 120/385 (31%), Positives = 164/385 (42%), Gaps = 71/385 (18%) Query: 10 MLAAFATLAAAGAQAQTSVTVYGLIDTGVEYLNNANAAGNSVVRLSSGNMNTSRIGFRGS 69 +AA A A AQTSV V GL+D + + + AG S V ++SG M TS GF+G+ Sbjct: 13 CVAALGAACALPAMAQTSVQVTGLVDNFIGSVKYSGDAGRSSV-VNSGGMTTSWFGFKGT 71 Query: 70 EDLGGGLKAIFQLENGFKLDTGG---FDGDANQIFNRQSNVGLEGGFGRVVAGRSYSTTY 126 EDLGGGLKA F L + F+ DTGG FDG+ F+R +NVGL G FG + GR + + Sbjct: 72 EDLGGGLKAKFNLTSFFRADTGGAGRFDGN-ETFFSRDANVGLIGKFGEISLGRDLAPHF 130 Query: 127 DFIGPFDPMGYSANYS---------------WVTSAGATGGRKDGMPTGVSNLVKYQ-GE 170 F+P G S S W S A TG SN + Y Sbjct: 131 LPSILFNPFGDSFQLSPLMLHADVPLFNGSRWSNSVAAD--------TGWSNEIIYTTPN 182 Query: 171 FSGVKIGAMYGFGEVAGQTSNGAKYGVGLGWGSGPFSLAATYDRNNSTTTVNTAYDRATS 230 +G+K Y FGEVAGQ+ G+ L + +GP LAA Y + VN ++ Sbjct: 183 MAGLKANIHYQFGEVAGQSGKN-NVGMNLLYSNGPLGLAAYYQK----IRVNNPLEQTPG 237 Query: 231 AHLAA-------------GYQLADAWKFNLGYRYYKKTLASGATDLRSDFYWGGVSYKFT 277 L A G+ + ++ F + + S DL+ G S Sbjct: 238 NVLPAATLLGGLTPARQTGWFVGGSYDFAVAKLFATYNQTSHDVDLQDRTVQLGTSIPLG 297 Query: 278 PAMTVIGAIY--YQNIKN----VAKDADPIMYSLRLKYAMSKRTDLYLSTAYAKAKNNQL 331 GAI + N K + +D S Y +SKRTDLY Y K Sbjct: 298 Q-----GAILASWANTKRDGAAIGQDLKRNTASFGYDYNISKRTDLYAVYMYDKITQQNT 352 Query: 332 VGLSRDDVGFGNSQFGMTMGMQHRF 356 GN+ + +G++HRF Sbjct: 353 ----------GNT---VALGIRHRF 364 >gi|152981716|ref|YP_001354197.1| porin [Janthinobacterium sp. Marseille] Length = 326 Score = 103 bits (257), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 114/361 (31%), Positives = 158/361 (43%), Gaps = 61/361 (16%) Query: 13 AFATLAAAG--AQAQTSVTVYGLIDTGVEYLNNANAAGNSVVRLSSGNMNTSRIGFRGSE 70 A A + A G +QAQ+SV VYGLID + Y AG V + +G M TS +G +GSE Sbjct: 10 ALAAMLACGTASQAQSSVQVYGLIDVALAYDKQPGKAG--VTGVENGKMTTSYLGLKGSE 67 Query: 71 DLGGGLKAIFQLENGFKLDTGG---FDGDANQIFNRQSNVGLEGGFGRVVAGRSYSTTYD 127 DLGGGL IF LE+ F+ DTG FDGD + R S VGL+G FG V GR+ + Sbjct: 68 DLGGGLSTIFALESYFRADTGSNGRFDGDG--FWTRSSYVGLQGRFGSVRLGRNSVPLFI 125 Query: 128 FIGPFDPMGYSANYS-----WVTSAGATGGRKDGMPTGVSNLVKY-QGEFSGVKIGAMYG 181 F+P G S YS + S TG +G S+ + Y FSG+ + + Sbjct: 126 STLLFNPFGDSFGYSPSIRHYFASGTVTG------DSGWSDSIAYVSPNFSGLTVNLI-- 177 Query: 182 FGEVAGQTSNGAKYGVGLGWGSGPFSLAATYDRNNSTTTVNTAYDRATSAHLAAGYQLAD 241 AG+ + G G + + GP L A Y R A T+ L + Y D Sbjct: 178 --AAAGEGNGGPNVGGSVLYTKGPLGLTAVYQRVRK----GAAIADTTTWQLGSSYDF-D 230 Query: 242 AWKFNLGYRYYKKTLASGATDLRSDFYWGGVSYKFTPAMTVIGAIYYQNIKNVAKDADPI 301 K Y K A + D + YK T I + + DP+ Sbjct: 231 VVKVFAQYGQVKNVSA------QPD-----IEYKLTDLGVAI-PLGGGKVLAAYGLLDPV 278 Query: 302 M------YSLRLKYAMSKRTDLYLSTAYAKAKNNQLVGLSRDDVGFGNSQFGMTMGMQHR 355 + SL Y +SKRTD+YL L RD++ ++ + +G++HR Sbjct: 279 VGAKRETLSLGYDYNLSKRTDVYLV-------------LMRDELDALSAGKSLAVGIRHR 325 Query: 356 F 356 F Sbjct: 326 F 326 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.133 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 862,042 Number of extensions: 40555 Number of successful extensions: 154 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 123 Number of HSP's successfully gapped: 9 Length of query: 356 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 272 Effective length of database: 910,473 Effective search space: 247648656 Effective search space used: 247648656 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)