BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4416.p (301 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982201|ref|YP_001352928.1| LysR family transcriptional reg... 140 1e-34 gi|152982816|ref|YP_001352236.1| LysR family transcriptional reg... 121 5e-29 gi|152982810|ref|YP_001352193.1| LysR family transcriptional reg... 104 8e-24 gi|152982762|ref|YP_001353011.1| transcriptional activator MetR ... 56 3e-09 gi|152981653|ref|YP_001353379.1| LysR family transcriptional reg... 54 8e-09 >gi|152982201|ref|YP_001352928.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 304 Score = 140 bits (353), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/281 (30%), Positives = 147/281 (52%), Gaps = 11/281 (3%) Query: 1 MAFSSDNVKVFLAVLDSGSFSAAARQLGRVPSSVSMTISQLEAELDLQLFDRTARDARPT 60 M FS + ++ FL V ++GSFSA AR+LG+ S+VS I+ +E +++L LFDRT R T Sbjct: 1 MRFSLEQLETFLLVAETGSFSATARKLGKTQSTVSAAIANIEIDMNLSLFDRTTRKPTLT 60 Query: 61 ELARALEPDARLLASTLRQLDAHALAMHQGLERKLTLAIAPELLSVPWARPLAVLA---A 117 + L +A + L+AHA ++ +LTLAI +P+ + VL+ A Sbjct: 61 AAGQKLLIEAEAVMERCIALEAHADSLGDSNPAELTLAI-----EIPYNTVMPVLSAFEA 115 Query: 118 EFPSLEVEVLSSPQADAMQMLYDNTAQLALVFERHAGDDSEAFQELSSEMMVAVIAPDHP 177 EFP +++ + + D +++ L + F + F +L +MV + PDHP Sbjct: 116 EFPFIDLTIRNPVYGDVSELVLKGEVDLGIAFAQPGYPSELNFTQLGRLVMVHITHPDHP 175 Query: 178 ARLRKKRKLRYEDLYDIRQIAVASRDASISDPRFFLARHIWRTDNHLATLSLVREGLGWA 237 L K K+ + DL+ R +A ++ + + A +W+ +++LA + +VR GLGWA Sbjct: 176 --LAKIEKVSFSDLHIHRHLAFSAHANKLPTTEYLRATKVWQAESYLALIEMVRAGLGWA 233 Query: 238 YLPHSLVQAQIEAGTLVVIDFDNISNQQRM-WVDVVWSKDR 277 LP L+ ++E G LV + + + VD++W K R Sbjct: 234 TLPRQLIHRELEQGDLVELQLEAYPYTDWLVGVDLLWQKRR 274 >gi|152982816|ref|YP_001352236.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 121 bits (304), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 128/249 (51%), Gaps = 2/249 (0%) Query: 6 DNVKVFLAVLDSGSFSAAARQLGRVPSSVSMTISQLEAELDLQLFDRTARDARPTELARA 65 D ++VF+AV+D GSFS AAR+L R S VS TI+ LEA+L+++LFDR+ R TE +A Sbjct: 10 DQLRVFVAVIDCGSFSRAARELHRTQSVVSYTIANLEAQLNVELFDRSKRKPTLTEAGKA 69 Query: 66 LEPDARLLASTLRQLDAHALAMHQGLERKLTLAIAPELLSVPWARPLAVLAAEFPSLEVE 125 L DAR + + + A A + QGLE +++LA+ + + L EFP++ + Sbjct: 70 LLADARTVGMKVDAMRARAKTLAQGLEAEVSLAVDVMFPNCRLVQALKAFQQEFPTVGLR 129 Query: 126 VLSSPQADAMQMLYDNTAQLALVFERHAGDDSEAFQELSSEMMVAVIAPDHPARLRKKRK 185 + M ++ + Q+ + D+ Q+L MV V +PDHP + + Sbjct: 130 LRIEALGAVMHLVGERVCQIGITGPMLDFSDTFQHQQLGHITMVPVASPDHPLG-KMEGI 188 Query: 186 LRYEDLYDIRQIAVASRDASISDPRF-FLARHIWRTDNHLATLSLVREGLGWAYLPHSLV 244 + E D Q+ + R + F +A WR + A L+ GLGW +P ++ Sbjct: 189 IPTEVARDHTQLVLTDRSQLTAGQNFGVIALRDWRLGDLGAKHMLLLNGLGWGSMPEEMI 248 Query: 245 QAQIEAGTL 253 +A +E+G L Sbjct: 249 RADLESGRL 257 >gi|152982810|ref|YP_001352193.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 294 Score = 104 bits (259), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 126/245 (51%), Gaps = 6/245 (2%) Query: 1 MAFSSDNVKVFLAVLDSGSFSAAARQLGRVPSSVSMTISQLEAELDLQLFDRTARDARPT 60 M ++ D +K F+ ++GS SAAAR+LG+ S+VS I+ LEA+L +LFDR+ R + T Sbjct: 1 MEWTIDRMKQFVVTAEAGSISAAARRLGKAQSAVSTAIALLEADLGFELFDRSRRSVQLT 60 Query: 61 ELARALEPDARLLASTLRQLDAHALAMHQGLERKLTLAIAPELLSVPWARPLAVLAAEFP 120 + +AR L LD A + G + KLTLA+ L + + ++ FP Sbjct: 61 PAGEVMLLEARELLRQAEGLDHRAQSFAAGQQPKLTLALDEALPYLAVGALVKEISQRFP 120 Query: 121 SLEVEVLSSPQADAMQMLYDNTAQLALVFERHAGDDSEAFQELSSEMMVAVIAPDHPARL 180 SLE+ L+ + + + A +A F+R S A + + S + HP L Sbjct: 121 SLELSQLNGTATEVAEYVEKQRASVAFHFDRGPCSLSFAQKHIGSVAQGIFVGRGHP--L 178 Query: 181 RKKRKLRYEDLYDIRQIAVASRDASISDPRFFLARHIWRTDNHLATLSLVREGLGWAYLP 240 K +K+ DL RQ+ + D +DP L+ +WR+D+ + ++V +G+GWA LP Sbjct: 179 TKIKKVTQRDLAKHRQLLMHMDD--YADPA--LSPSVWRSDSFYSIAAMVADGIGWAILP 234 Query: 241 HSLVQ 245 ++ + Sbjct: 235 LNIAE 239 >gi|152982762|ref|YP_001353011.1| transcriptional activator MetR [Janthinobacterium sp. Marseille] Length = 306 Score = 55.8 bits (133), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 5/186 (2%) Query: 7 NVKVFLAVLDSGSFSAAARQLGRVPSSVSMTISQLEAELDLQLFDRTARDARPTELARAL 66 ++K LA+ ++G+ AA L S++S I QLE LF+R + R T L Sbjct: 9 HLKTLLALREAGNLLRAAALLNVTQSALSHQIKQLEDHHGTPLFERKSTPVRFTPAGERL 68 Query: 67 EPDARLLASTLRQLDAHALAMHQGLERKLTLAIAPELLSVPWARP-LAVLAAEFPSLEVE 125 A + + + + + + QG+ +L +A+ W P + V +P +E++ Sbjct: 69 LKLADTVLPQVAETERDLVRLAQGVAGQLRIAVECH-TCFDWLMPAMDVFRGRWPEVELD 127 Query: 126 VLSSPQADAMQMLYDNTAQLALVFERHAGDDSEAFQELSSEMMVAVIAPDHPARLRKKRK 185 ++S QAD + +LY++ A +A+V E D+ + L +VA++A DHP L K Sbjct: 128 IVSGFQADPVGLLYEHRADVAIVAEIDP-DEKVDYHALFRFEIVALVAHDHP--LADKEF 184 Query: 186 LRYEDL 191 L ED Sbjct: 185 LTAEDF 190 >gi|152981653|ref|YP_001353379.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 285 Score = 54.3 bits (129), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 108/247 (43%), Gaps = 25/247 (10%) Query: 8 VKVFLAVLDSGSFSAAARQLGRVPSSVSMTISQLEAELDLQLFDRTARDARPTELARALE 67 ++ F+AV+D+GSF+ AA + S+VS I +LE + D L +R+ R T +L Sbjct: 7 LRSFVAVVDTGSFTRAADSVHLTQSTVSQQIRRLEEQFDCDLLNRSGRYVATTPEGESLL 66 Query: 68 PDARLLASTLRQLDAHALAMHQGLERKLTLAIAPELLSVPWARP-LAVLAAEFPSLEVEV 126 AR + L+ +D + Q +E+ PE + P LA A +P + +E+ Sbjct: 67 GYARRI---LQLMDEAVEQVTQSVEQGEIQLGVPEDFAAHALTPVLAAFAGNYPGIRLEI 123 Query: 127 LSSPQADAMQMLYDNTAQLALVFERHAGDDSEAFQELSSEMMVAVIAPDHPARLRKKRKL 186 S D +M LALV +R DS E + V + + PA LR L Sbjct: 124 TSGLSHDLYRMFQQGKLDLALVKQR---KDSAPGIASWPEPLCWVDSLNRPAALRDPVPL 180 Query: 187 ---RYEDLYDIRQIAVASRDASISDPRFFLARHIWR---TDNHLATLS-LVREGLGWAYL 239 LY R + DA + R WR LA++S V++GLG + L Sbjct: 181 VAFPIGGLY--RNEMTHALDA--------IGRR-WRIGFVSTSLASVSAAVQDGLGISLL 229 Query: 240 PHSLVQA 246 P + QA Sbjct: 230 PRRMAQA 236 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.132 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 647,996 Number of extensions: 24675 Number of successful extensions: 143 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 140 Number of HSP's successfully gapped: 9 Length of query: 301 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 218 Effective length of database: 914,170 Effective search space: 199289060 Effective search space used: 199289060 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)