BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4415.p
         (149 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981726|ref|YP_001355271.1| hypothetical protein mma_3581 [...    82   1e-17

>gi|152981726|ref|YP_001355271.1| hypothetical protein mma_3581
           [Janthinobacterium sp. Marseille]
          Length = 154

 Score = 82.4 bits (202), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 70/124 (56%), Gaps = 1/124 (0%)

Query: 6   RKLVYASLFEGLAIIFTTVGLTVFAGHDSTHSLAAAVVSSTIAFLWNFIFNTLFERWEAR 65
           R++++A LFE  A+I     ++   G D  H  A AV+ +  A   N I+N ++E +E R
Sbjct: 18  RRVIHAVLFEFFALIILVPLMSYGFGMDMLHFGALAVMLALSAMASNMIYNHIYEAFEHR 77

Query: 66  QPRRGRNFARRAAHAIGFEGGLVVMLVPLFAWWLGISLWQALALDFGLIVFFMIYTYLFN 125
              R R    R  H +GFE   + + +PL AWWL IS+W AL LD    VFFM+Y + FN
Sbjct: 78  YGWR-RTVRMRVCHTLGFEAFFMSIALPLTAWWLDISVWDALMLDLVFSVFFMLYAFCFN 136

Query: 126 LLFD 129
            ++D
Sbjct: 137 WVYD 140


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.333    0.143    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 365,200
Number of extensions: 14534
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 1,221,021
Length adjustment: 75
Effective length of query: 74
Effective length of database: 943,746
Effective search space: 69837204
Effective search space used: 69837204
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 125 (52.8 bits)