BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4413.p (300 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982421|ref|YP_001354091.1| AraC family transcriptional reg... 91 1e-19 gi|152982501|ref|YP_001354050.1| AraC family transcriptional reg... 83 2e-17 gi|152982551|ref|YP_001354048.1| AraC family transcriptional reg... 77 2e-15 gi|152982829|ref|YP_001353327.1| hypothetical protein mma_1637 [... 71 7e-14 gi|152981156|ref|YP_001353258.1| AraC family transcriptional reg... 66 3e-12 >gi|152982421|ref|YP_001354091.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 330 Score = 90.5 bits (223), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 91/181 (50%), Gaps = 6/181 (3%) Query: 122 SDELRGRRVSGLSTV--TGQADPVLAHLAWALAPALAWPDPDNQLFIDQLGLAMGTHLLQ 179 +DE+ GRR+ + + T ADP L +L L+ P N L D L A+ + Sbjct: 148 ADEIYGRRLDEIDLLAPTETADPSLTYLLDTCKHMLSEPAGTN-LSSDYLAQAIVACVFS 206 Query: 180 RYG---GVTLPTTRPVRLSRLHEERAKEMLLQKVKGNVCIPDIARECNMSASYFLRAFKA 236 R+ V V LS+ +R + L + G+ + D+A +S + F F Sbjct: 207 RHSQLRDVPRSADSKVPLSQAQMQRVNDYLQANLDGSFQVADLAAVIGLSRTIFFERFTV 266 Query: 237 STGYTPHQWLLVQRVEMAREYLRHTQLSLAEIAVACDFYDQSHFSRVFSQVVGSTPGAWR 296 +T TP+Q+L V R+ A++ LR +LSL +IA AC + DQSH +R F + VG PG +R Sbjct: 267 TTKATPNQYLQVLRINRAKQLLRDGKLSLVDIAFACGYADQSHLARFFKRFVGVAPGRYR 326 Query: 297 R 297 + Sbjct: 327 K 327 >gi|152982501|ref|YP_001354050.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 338 Score = 83.2 bits (204), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/218 (27%), Positives = 97/218 (44%), Gaps = 14/218 (6%) Query: 84 FAPGAVYTRDFSEDYRADLQTPFDFLLVELPLSWFAAASDELRGRRVSGLSTVT--GQAD 141 APG YT +LQ P F + + +DE+ G+R+ + + + D Sbjct: 118 IAPGVSYT--------VELQQPGTFFYLFIKNEILVNVADEIFGKRLDDIDMFSPLQETD 169 Query: 142 PVLAHLAWALAPALAWPDPDNQLFIDQLGLAMGTHLLQRYG---GVTLPTTRPVRLSRLH 198 L L + L D+ D + A+ ++ V V LS+ Sbjct: 170 KGLQSLLHSCRHMLNESH-DSSFRSDYIAQAIVAQFYSKHTQLRDVPRVMDSKVPLSQGQ 228 Query: 199 EERAKEMLLQKVKGNVCIPDIARECNMSASYFLRAFKASTGYTPHQWLLVQRVEMAREYL 258 +R + L + G I D+A +S + F F + YTP+Q+L + R+ A++ L Sbjct: 229 MKRVNDYLQANLHGAFQIADLAASIGLSRTVFFERFVHTMKYTPNQYLQILRINRAKQLL 288 Query: 259 RHTQLSLAEIAVACDFYDQSHFSRVFSQVVGSTPGAWR 296 R +LSL ++A AC + DQSH SR F + VG +PG +R Sbjct: 289 RDRKLSLVDVAFACGYADQSHLSRFFKRFVGVSPGKYR 326 >gi|152982551|ref|YP_001354048.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 153 Score = 76.6 bits (187), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 59/107 (55%) Query: 194 LSRLHEERAKEMLLQKVKGNVCIPDIARECNMSASYFLRAFKASTGYTPHQWLLVQRVEM 253 LS +R + ++ G I ++A MS + F + F + TP+Q+L + RVE Sbjct: 42 LSEAQMKRVHDYFYNRLHGGFQIAELAATLGMSRTSFFKRFGRTARVTPNQYLQILRVEK 101 Query: 254 AREYLRHTQLSLAEIAVACDFYDQSHFSRVFSQVVGSTPGAWRRKLR 300 A+ LR L+L EIA AC + DQSH +R F + V +PG +R K+R Sbjct: 102 AKILLRKENLTLIEIAFACGYADQSHLARFFKRYVRMSPGRYRSKIR 148 >gi|152982829|ref|YP_001353327.1| hypothetical protein mma_1637 [Janthinobacterium sp. Marseille] Length = 148 Score = 71.2 bits (173), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 61/114 (53%) Query: 186 LPTTRPVRLSRLHEERAKEMLLQKVKGNVCIPDIARECNMSASYFLRAFKASTGYTPHQW 245 +P + V LS ++ L + G + + +A M + F F + TP+Q+ Sbjct: 27 VPVHKRVPLSNAQMDKVCGYLAGHLNGRMRVAGLAALIGMGRTSFFERFTMTANMTPNQY 86 Query: 246 LLVQRVEMAREYLRHTQLSLAEIAVACDFYDQSHFSRVFSQVVGSTPGAWRRKL 299 L R+E A+E +R + +L +IA +C + DQSH +R F + VG +PG +RR++ Sbjct: 87 LQFLRIEKAKELMRDPRFTLLDIAFSCGYSDQSHLTRFFKRYVGVSPGHYRREV 140 >gi|152981156|ref|YP_001353258.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 374 Score = 65.9 bits (159), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 4/116 (3%) Query: 189 TRPVRLSRLHE----ERAKEMLLQKVKGNVCIPDIARECNMSASYFLRAFKASTGYTPHQ 244 RP R++ + + ++A ++ + V I D A +MS F R FK TG+TPH+ Sbjct: 223 VRPARVTEVSKSTKIQQASRWFIEHMAEPVSILDAANFVSMSERNFQRQFKRETGWTPHE 282 Query: 245 WLLVQRVEMAREYLRHTQLSLAEIAVACDFYDQSHFSRVFSQVVGSTPGAWRRKLR 300 +LL R+E R+ L T L + +IA C F + H S++F + + +P +RR R Sbjct: 283 FLLHLRLEAVRQQLTETDLPVDKIARRCGFLNGEHVSKLFRKHLLISPCEYRRNER 338 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.134 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 649,007 Number of extensions: 23562 Number of successful extensions: 91 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 91 Number of HSP's successfully gapped: 7 Length of query: 300 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 217 Effective length of database: 914,170 Effective search space: 198374890 Effective search space used: 198374890 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)