BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4412.p (519 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982333|ref|YP_001354112.1| two-component sensor histidine ... 149 5e-37 gi|152982047|ref|YP_001352158.1| signal transduction histidine k... 134 9e-33 gi|152983036|ref|YP_001352598.1| sensory box histidine kinase [J... 78 1e-15 gi|152981014|ref|YP_001353510.1| two-component regulatory protei... 71 1e-13 gi|152982019|ref|YP_001352553.1| serine/threonine kinase protein... 67 2e-12 >gi|152982333|ref|YP_001354112.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] Length = 587 Score = 149 bits (375), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 91/227 (40%), Positives = 128/227 (56%), Gaps = 2/227 (0%) Query: 291 VARANTVGQLTASIAHEINQPLMSIVSNAGASLRWLNRPV-PDLEHARAGLRDIISEGQR 349 VAR +VG+LTASI HEINQPL +I++NA A+ LN+ PD E RA L DI + R Sbjct: 354 VARLGSVGELTASIVHEINQPLGAILANADAATMMLNQQSHPDHE-LRAILADIRDDNLR 412 Query: 350 AGGIISGLQDLTRNRAPEFERVNLHALIRHILTLSRSQLEQREVSLTLSLMPADVFVLGD 409 A II L+ L R+ E + V+L+ +I +L + + V + + L P ++GD Sbjct: 413 ASLIIQKLRVLLSKRSLESKPVSLNEVIDTSRSLLGNLAIKHHVMMAIELAPDLPMIMGD 472 Query: 410 PVQLQQVMLNLVINAIDAMTSVVPNTRLLGISASCCNEQRVEVRVQDSGVGIAAEAMSRV 469 LQQV++NL NA++AM +V P R L I CN + + V D G GI + + Sbjct: 473 STHLQQVLINLASNAMEAMEAVPPAQRTLSIKTEQCNASHIRLIVADKGPGIPTNILPNI 532 Query: 470 FDAFYTTKENGMGMGLAICRSIIEAHRGRLRVMAAEPQGTLFFFDLP 516 F++FYTTK GMGMGLAI ++I++AH G + G F P Sbjct: 533 FESFYTTKPEGMGMGLAIVQTIVDAHCGLIETFNDPAGGAAFVITFP 579 >gi|152982047|ref|YP_001352158.1| signal transduction histidine kinase [Janthinobacterium sp. Marseille] Length = 678 Score = 134 bits (338), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 96/273 (35%), Positives = 146/273 (53%), Gaps = 19/273 (6%) Query: 259 GTFTEYMGTATDITVRRQAEYAIRAAQVDVERVARANTVGQLTASIAHEINQPLMSIVSN 318 G T +MG+ DI+ R++ E R + ++ AR T+G++ +++AHE+NQPL +I S Sbjct: 398 GAQTGWMGSILDISDRKRVEDLNRQQEEKLQASARLATMGEIASTLAHELNQPLAAISSY 457 Query: 319 AGASLRWLNRP--------VPDLEHARAGLRDIISEGQRAGGIISGLQDLTRNRAPEFER 370 +L L R + L HA L ++ QRAG II + + R P Sbjct: 458 TTGALNMLERDKSKAAEVNIDMLTHA---LEKAQAQAQRAGQIIRSVHTFVKKREPMRTA 514 Query: 371 VNLHALIRHILTLSRSQLEQREVSLTLSL---MPADVFVLGDPVQLQQVMLNLVINAIDA 427 V + LI ++ L Q ++ V + + + +PA VL D V L+QV+LNL NAI++ Sbjct: 515 VTIEELIDNVAPLVELQAQKYFVFIKIDIPDNLPA---VLADHVLLEQVLLNLTRNAIES 571 Query: 428 MTSVVPNTRLLGISASC--CNEQRVEVRVQDSGVGIAAEAMSRVFDAFYTTKENGMGMGL 485 M S+ P R+L I+A+ + V V + D G GI E R++ F++TK +GMGMGL Sbjct: 572 MQSIAPEKRVLRIAAAIDESDPPNVVVSISDQGHGIPPEVAERLYSPFFSTKADGMGMGL 631 Query: 486 AICRSIIEAHRGRLRVMAAEPQGTLFFFDLPRI 518 +ICR+ IE H G L GT+F F LP + Sbjct: 632 SICRTAIEFHGGTLTHADNPGGGTIFRFSLPTL 664 >gi|152983036|ref|YP_001352598.1| sensory box histidine kinase [Janthinobacterium sp. Marseille] Length = 626 Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 74/141 (52%), Gaps = 2/141 (1%) Query: 153 LRTSQELLKQGERFNHAGSMRYLVREDLMFCSDELCRIYGLAAGRNCITYEEFASIMHPD 212 LR S+ L +G++ + GS R+ + + SDE RI+G + +E ++S HP Sbjct: 153 LRYSEAFLTEGQKISRTGSWRWNIEVHSLEWSDEHYRIFGYEPSSDMSCFEMYSSRAHPT 212 Query: 213 DRQEVLDTVNAAVAMGGTIRVEHRICRQDTGEIRYLSGIGKPVWV-DGTFTEYMGTATDI 271 D + + V AVA ++RI G IR+L GIG PV+ + F Y+G DI Sbjct: 213 DHLLLANVVKEAVAKKQRFECDYRIILS-AGSIRFLRGIGMPVFSRNDHFEGYIGVTVDI 271 Query: 272 TVRRQAEYAIRAAQVDVERVA 292 T +RQAE ++R ++ + +A Sbjct: 272 TAQRQAEDSLRKSEQEFRTLA 292 >gi|152981014|ref|YP_001353510.1| two-component regulatory protein sensor kinase for high-affinity potassium transport system [Janthinobacterium sp. Marseille] Length = 908 Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 113/250 (45%), Gaps = 30/250 (12%) Query: 281 IRAAQVDVERVARANTVGQLTASIAHEINQPLMSIVSNAGASLRWLNRPVPDLEHARAGL 340 I AQ + R+ L A+I+H++ PL ++V + + L R P+L A+ L Sbjct: 655 IEVAQDALLRMESERLRNSLLAAISHDLRTPLTALVGLSES----LTRSKPELAAAQQEL 710 Query: 341 RDII-SEGQRAGGIISGLQDLTRNRAPE---------FERVNLHALIRHILTLSRSQLEQ 390 + E R G +++ L D+ R ++ E FE V +L L R Q+ Sbjct: 711 AHALHEEALRMGNLVTNLLDMARIQSGEVKLNLQWQQFEEVVGSSLRAVQSLLGRHQVHT 770 Query: 391 REVSLTLSLMPADVFVLGDPVQLQQVMLNLVINAIDAMTSVVPNTRLLGISASCCNEQRV 450 R L P V D V +++V+ NL+ NA + P + I+A Q + Sbjct: 771 R-------LAPGLPLVNFDAVLIERVLCNLLENA----SKYTPAGSQITIAAELSG-QYL 818 Query: 451 EVRVQDSGVGIAAEAMSRVFDAFYTTKEN----GMGMGLAICRSIIEAHRGRLRVMAAEP 506 +V V D+G G+ +F+ F + G+G+GLAICR+IIEAH G +R + Sbjct: 819 DVAVYDNGPGLPPGQEEAIFEKFTRGERESATPGVGLGLAICRAIIEAHHGTIRGGHSPQ 878 Query: 507 QGTLFFFDLP 516 G F LP Sbjct: 879 GGAAIIFTLP 888 >gi|152982019|ref|YP_001352553.1| serine/threonine kinase protein [Janthinobacterium sp. Marseille] Length = 1667 Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 75/262 (28%), Positives = 123/262 (46%), Gaps = 23/262 (8%) Query: 280 AIRAAQVDVERVARANTVGQLTASIAHEINQPL------MSIVSNAGASLRWL------N 327 ++R Q + A+ ++GQL A +AHEIN PL S ++ A L+ L Sbjct: 1390 SLRRTQKQLVESAKLASLGQLVAGVAHEINTPLGVGVTGASTLAEETARLKSLFQSGAMK 1449 Query: 328 RPVPDLEHARAGL--RDIISEGQRAGGIISGLQDLTRNRAPEFER-VNLHALIRHILTLS 384 R D AG + ++S +RA +I +D+ ++ E R L A I IL+ Sbjct: 1450 RSDLDAYVGTAGTISKLLLSNMERAATLIQSFKDVAVDQTSEERRTFRLKAYIDEILSNL 1509 Query: 385 RSQLEQREVSLTLSLMPADVFVLGDPVQLQQVMLNLVINAI-DAMTSVVPNTRLLGISAS 443 L + E + + A + V P L QV+ NLV+N++ A T VP L+ + + Sbjct: 1510 SPMLRRSEHRVAVDCDEA-IEVDTYPGALSQVITNLVMNSLLHAFTDHVPGEILIVVRSV 1568 Query: 444 CCNEQR---VEVRVQDSGVGIAAEAMSRVFDAFYTTKENGMGMGLA--ICRSIIEAH-RG 497 Q +E+ + D+G GI E ++++FD F+TT G GL I +++ + +G Sbjct: 1569 YEQGQETDMIELSLSDNGQGIPQENLAKIFDPFFTTTRGRGGSGLGLNIVHNLVTSSLQG 1628 Query: 498 RLRVMAAEPQGTLFFFDLPRIP 519 ++ V + GT F PR P Sbjct: 1629 QIAVESQLGVGTTFILRFPRSP 1650 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,090,289 Number of extensions: 43059 Number of successful extensions: 206 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 199 Number of HSP's successfully gapped: 16 Length of query: 519 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 432 Effective length of database: 899,382 Effective search space: 388533024 Effective search space used: 388533024 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)