BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4411.p
         (125 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982809|ref|YP_001354109.1| hypothetical protein mma_2419 [...    70   3e-14
gi|152981398|ref|YP_001354111.1| two-components system response ...    58   2e-10

>gi|152982809|ref|YP_001354109.1| hypothetical protein mma_2419
           [Janthinobacterium sp. Marseille]
          Length = 128

 Score = 70.1 bits (170), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 58/105 (55%)

Query: 8   IAVIDDDLGVRAALCNLLDSAGYRSCSFDCGEDFLVSPCLEQACCAIVDLGLARMSGFEL 67
           IAV++DD G+RAA+  +L++ G+    F   E FL S  +E   C ++DL L  +SGFEL
Sbjct: 10  IAVVEDDNGLRAAILRMLNACGWNPVGFASAEGFLESAVVESIDCLVLDLYLPGISGFEL 69

Query: 68  AEQLAQLRPTLPLLLISAQVTPPQRQRALALGFPLLTKPVDADTL 112
            EQ+      +P++ I+AQ     R R   +G   L KP    +L
Sbjct: 70  LEQIKAKGMDIPIIFITAQDDEKIRVRVEGVGKLYLPKPFTGQSL 114


>gi|152981398|ref|YP_001354111.1| two-components system response
           regulator [Janthinobacterium sp. Marseille]
          Length = 226

 Score = 58.2 bits (139), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 1/114 (0%)

Query: 8   IAVIDDDLGVRAALCNLLDSAGYRSCSFDCGEDFLVSPCLEQACCAIVDLGLARMSGFEL 67
           I ++DDD   R AL  LL + GYR   +    D L+S    ++ C I+D+ +   SG +L
Sbjct: 15  IRIVDDDPSFRRALQRLLQTTGYRVLDYSSVGDMLLSGIGNESGCIILDINMPGPSGLDL 74

Query: 68  AEQLAQLRPTLPLLLISAQVTPPQRQRALALGFP-LLTKPVDADTLLVLLTATL 120
            E L      LP++ I+ + T     RA+  G      KP+D+  LL  L  TL
Sbjct: 75  QEMLVADAHPLPIIFITGEATVSDSIRAMKAGAADFFCKPLDSQALLCTLDKTL 128


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.325    0.140    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 219,758
Number of extensions: 6616
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 2
Length of query: 125
Length of database: 1,221,021
Length adjustment: 73
Effective length of query: 52
Effective length of database: 951,140
Effective search space: 49459280
Effective search space used: 49459280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 124 (52.4 bits)