BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4408.p
         (229 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982279|ref|YP_001354505.1| isochorismatase family protein ...   124   6e-30
gi|152982757|ref|YP_001353618.1| hypothetical protein mma_1928 [...   124   7e-30

>gi|152982279|ref|YP_001354505.1| isochorismatase family protein
           [Janthinobacterium sp. Marseille]
          Length = 205

 Score =  124 bits (310), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 71/180 (39%), Positives = 109/180 (60%), Gaps = 1/180 (0%)

Query: 3   TNTKLDVLTPTNCQFIIIDHQPQMAFGVQSMDRQALKNNVVALAKSAKVFNIPTIITTVE 62
           TN   + LT  N   I++DHQ  +  GV+      LK+NVVALAK+AK   +P ++TT  
Sbjct: 2   TNRTYEALTADNAALILVDHQVGLMTGVRDYSTGELKHNVVALAKAAKALKLPIVVTTTA 61

Query: 63  TQGFSGYTYPELLSVFPEHDILERTSMNSWDDQKVRDALKANGKKKVVVAGLWTEVCNNS 122
                G T+PEL+   P  +I++R+S+N++DD++V  A++A G+KK++ AG+  EVC   
Sbjct: 62  RDSMWGPTFPELVEALPGIEIIDRSSVNAYDDERVAKAIEATGRKKLIFAGISLEVCAAF 121

Query: 123 FALCAMAEGDYEIYMVADASGGTSKEAHDYAMQRMIQAGVIPVTWQQVMLEWQRDWARKE 182
            A+ A+A G  + Y+  DASG  S+  H+  + RM QAGVI   +  +M+E  +D  R E
Sbjct: 122 PAMTAVARG-LDAYVAVDASGTFSETKHEVGLLRMQQAGVILSDYATLMVEILKDNGRPE 180


>gi|152982757|ref|YP_001353618.1| hypothetical protein mma_1928
           [Janthinobacterium sp. Marseille]
          Length = 208

 Score =  124 bits (310), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 68/170 (40%), Positives = 101/170 (59%), Gaps = 2/170 (1%)

Query: 10  LTPTNCQFIIIDHQPQMAFGVQSMDRQALKNNVVALAKSAKVFNIPTIITTVETQGFSGY 69
           L   +   +++DHQ  +   V+ +D    KNNV+AL+  A  F +PTI+TT    G +G 
Sbjct: 8   LDKNDVAVLLVDHQAGLLSLVRDIDPDKFKNNVLALSDLAAYFKLPTILTTSFEDGPNGP 67

Query: 70  TYPELLSVFPEHDILERTS-MNSWDDQKVRDALKANGKKKVVVAGLWTEVCNNSFALCAM 128
             PEL + FP+   + R   +N+WD++    A+KA GKK++++AG+ TEVC    AL A+
Sbjct: 68  LMPELKAQFPDAPYIARPGQINAWDNEDFVKAIKATGKKQLLIAGVVTEVCVAFPALSAL 127

Query: 129 AEGDYEIYMVADASGGTSKEAHDYAMQRMIQAGVIPVTWQQVMLEWQRDW 178
           AEG YE+++V DASG  ++   D A  RM QAG   ++W  V  E  RDW
Sbjct: 128 AEG-YEVFVVTDASGTFNEITRDAAWDRMSQAGAQLMSWFGVACELHRDW 176


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.130    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 522,702
Number of extensions: 19071
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 2
Length of query: 229
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 149
Effective length of database: 925,261
Effective search space: 137863889
Effective search space used: 137863889
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)