BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4402.p (300 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982421|ref|YP_001354091.1| AraC family transcriptional reg... 86 3e-18 gi|152982501|ref|YP_001354050.1| AraC family transcriptional reg... 77 2e-15 gi|152982829|ref|YP_001353327.1| hypothetical protein mma_1637 [... 74 1e-14 gi|152982551|ref|YP_001354048.1| AraC family transcriptional reg... 73 2e-14 gi|152983296|ref|YP_001354496.1| AraC family transcriptional reg... 62 4e-11 >gi|152982421|ref|YP_001354091.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 330 Score = 85.9 bits (211), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 83/164 (50%), Gaps = 21/164 (12%) Query: 158 EAANDSDTVFIDTVTLALH----THLAQRYGGQA--------------APRSSGR---LA 196 E A+ S T +DT L T+L+ Y QA PRS+ L+ Sbjct: 166 ETADPSLTYLLDTCKHMLSEPAGTNLSSDYLAQAIVACVFSRHSQLRDVPRSADSKVPLS 225 Query: 197 GWQQVRVRDYMLAHLGQRLSLAELAAQCGLSRAHFSRAFKLSFGLPPHAWLQRQRIALAC 256 Q RV DY+ A+L +A+LAA GLSR F F ++ P+ +LQ RI A Sbjct: 226 QAQMQRVNDYLQANLDGSFQVADLAAVIGLSRTIFFERFTVTTKATPNQYLQVLRINRAK 285 Query: 257 GLLREGGKSMTAIALECGFSDQSHFSRVFKQVMGMGPMVWVRDS 300 LLR+G S+ IA CG++DQSH +R FK+ +G+ P + +D+ Sbjct: 286 QLLRDGKLSLVDIAFACGYADQSHLARFFKRFVGVAPGRYRKDA 329 >gi|152982501|ref|YP_001354050.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 338 Score = 76.6 bits (187), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/175 (33%), Positives = 86/175 (49%), Gaps = 14/175 (8%) Query: 128 GRRISGLQPGQALQ--DPVVWHLVHALLPVLGEAANDSDTVFIDTVTLALHTHLAQRYGG 185 G+R+ + LQ D + L+H+ +L E+ + S D + A+ +AQ Y Sbjct: 153 GKRLDDIDMFSPLQETDKGLQSLLHSCRHMLNESHDSS--FRSDYIAQAI---VAQFYSK 207 Query: 186 QAAPRSSGR-------LAGWQQVRVRDYMLAHLGQRLSLAELAAQCGLSRAHFSRAFKLS 238 R R L+ Q RV DY+ A+L +A+LAA GLSR F F + Sbjct: 208 HTQLRDVPRVMDSKVPLSQGQMKRVNDYLQANLHGAFQIADLAASIGLSRTVFFERFVHT 267 Query: 239 FGLPPHAWLQRQRIALACGLLREGGKSMTAIALECGFSDQSHFSRVFKQVMGMGP 293 P+ +LQ RI A LLR+ S+ +A CG++DQSH SR FK+ +G+ P Sbjct: 268 MKYTPNQYLQILRINRAKQLLRDRKLSLVDVAFACGYADQSHLSRFFKRFVGVSP 322 >gi|152982829|ref|YP_001353327.1| hypothetical protein mma_1637 [Janthinobacterium sp. Marseille] Length = 148 Score = 73.6 bits (179), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 60/105 (57%) Query: 195 LAGWQQVRVRDYMLAHLGQRLSLAELAAQCGLSRAHFSRAFKLSFGLPPHAWLQRQRIAL 254 L+ Q +V Y+ HL R+ +A LAA G+ R F F ++ + P+ +LQ RI Sbjct: 35 LSNAQMDKVCGYLAGHLNGRMRVAGLAALIGMGRTSFFERFTMTANMTPNQYLQFLRIEK 94 Query: 255 ACGLLREGGKSMTAIALECGFSDQSHFSRVFKQVMGMGPMVWVRD 299 A L+R+ ++ IA CG+SDQSH +R FK+ +G+ P + R+ Sbjct: 95 AKELMRDPRFTLLDIAFSCGYSDQSHLTRFFKRYVGVSPGHYRRE 139 >gi|152982551|ref|YP_001354048.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 153 Score = 72.8 bits (177), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 41/110 (37%), Positives = 58/110 (52%) Query: 184 GGQAAPRSSGRLAGWQQVRVRDYMLAHLGQRLSLAELAAQCGLSRAHFSRAFKLSFGLPP 243 G AA L+ Q RV DY L +AELAA G+SR F + F + + P Sbjct: 31 GPSAAYNGQAPLSEAQMKRVHDYFYNRLHGGFQIAELAATLGMSRTSFFKRFGRTARVTP 90 Query: 244 HAWLQRQRIALACGLLREGGKSMTAIALECGFSDQSHFSRVFKQVMGMGP 293 + +LQ R+ A LLR+ ++ IA CG++DQSH +R FK+ + M P Sbjct: 91 NQYLQILRVEKAKILLRKENLTLIEIAFACGYADQSHLARFFKRYVRMSP 140 >gi|152983296|ref|YP_001354496.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 281 Score = 62.0 bits (149), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 1/84 (1%) Query: 216 SLAELAAQCGLSRAHFSRAFKLSFGLPPHAWLQRQRIALACGLLREGGKSMTAIALECGF 275 S+AELA++ +SRA ++ FK G P +L R++LA L+RE G+S+T IA + G+ Sbjct: 189 SIAELASESNMSRAAYAVHFKRVIGQTPADYLLSWRVSLAQKLMRE-GRSITLIAAQVGY 247 Query: 276 SDQSHFSRVFKQVMGMGPMVWVRD 299 S SR F++ G+ P W++D Sbjct: 248 ESPSALSRAFRRKTGLSPRDWLKD 271 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.326 0.138 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 737,126 Number of extensions: 29970 Number of successful extensions: 145 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 144 Number of HSP's successfully gapped: 9 Length of query: 300 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 217 Effective length of database: 914,170 Effective search space: 198374890 Effective search space used: 198374890 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)