BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4399.p (206 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981398|ref|YP_001354111.1| two-components system response ... 148 3e-37 gi|152981441|ref|YP_001352157.1| two-components system response ... 127 4e-31 gi|152982809|ref|YP_001354109.1| hypothetical protein mma_2419 [... 77 1e-15 gi|152983037|ref|YP_001352599.1| two-component response regulato... 73 1e-14 gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(... 72 2e-14 >gi|152981398|ref|YP_001354111.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 226 Score = 148 bits (373), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 78/200 (39%), Positives = 118/200 (59%) Query: 3 STVYVVDDDGMVRTALLRLLAAAGYTARGFASADEFLQVPLPSTPCCLLLDMKMPGADGF 62 + + +VDDD R AL RLL GY ++S + L + + C++LD+ MPG G Sbjct: 13 AVIRIVDDDPSFRRALQRLLQTTGYRVLDYSSVGDMLLSGIGNESGCIILDINMPGPSGL 72 Query: 63 DVVHRLEQRGDAIPVIFISGYGTIPTTVQAMKAGAHEFLTKPIEDERLLGAVEEALTVAG 122 D+ L +P+IFI+G T+ +++AMKAGA +F KP++ + LL +++ L A Sbjct: 73 DLQEMLVADAHPLPIIFITGEATVSDSIRAMKAGAADFFCKPLDSQALLCTLDKTLKDAA 132 Query: 123 RQLHKRVEHAANASRLEKLTPREREVLELAIGGLLNKQIATELGISEITVKVHKRRVMDK 182 + K E +R LT RE+EVL + G LNKQI+ +L ++E TVK H+ +VM+K Sbjct: 133 CKRKKSKELCDLEARYATLTSREKEVLAMVTRGALNKQISAKLDVAERTVKAHRAKVMEK 192 Query: 183 MQTKTLADLVRAAERLQIHS 202 M+ KTLA+LV E+L I S Sbjct: 193 MEVKTLAELVHVVEKLHIES 212 >gi|152981441|ref|YP_001352157.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 197 Score = 127 bits (320), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 74/201 (36%), Positives = 115/201 (57%), Gaps = 20/201 (9%) Query: 5 VYVVDDDGMVRTALLRLLAAAGYTARGFASADEFLQ----VPLPSTPC--CLLLDMKMPG 58 ++++DD+ ++R +L+ L + G A + S FL +P ++P C+LLD++MP Sbjct: 2 LHIIDDEEVIRDSLMWLAKSRGIPATAYDSGKAFLTTLDTMPRATSPQGQCILLDVRMPE 61 Query: 59 ADGFDVVHRLEQRG--DAIPVIFISGYGTIPTTVQAMKAGAHEFLTKPIEDERLLGAVEE 116 G + L RG PVIF++G+G +P V +K GA +F KP D +L+ ++E Sbjct: 62 VSGVALFDLLTSRGLTQTFPVIFLTGHGDVPMAVDTLKRGAFDFFEKPFNDNKLMDRIQE 121 Query: 117 ALTVAGRQLHKRVEHAANA----SRLEKLTPREREVLELAIGGLLNKQIATELGISEITV 172 AL + EHA+ + +RL L+ REREVL+L + G +NK IA +LGIS TV Sbjct: 122 ALASS--------EHASASVAIHTRLAALSGREREVLDLILEGKMNKVIADKLGISMRTV 173 Query: 173 KVHKRRVMDKMQTKTLADLVR 193 +VH+ + DKM KT +L R Sbjct: 174 EVHRAHIFDKMNVKTAVELAR 194 >gi|152982809|ref|YP_001354109.1| hypothetical protein mma_2419 [Janthinobacterium sp. Marseille] Length = 128 Score = 76.6 bits (187), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 69/118 (58%), Gaps = 1/118 (0%) Query: 5 VYVVDDDGMVRTALLRLLAAAGYTARGFASADEFLQVPLPSTPCCLLLDMKMPGADGFDV 64 + VV+DD +R A+LR+L A G+ GFASA+ FL+ + + CL+LD+ +PG GF++ Sbjct: 10 IAVVEDDNGLRAAILRMLNACGWNPVGFASAEGFLESAVVESIDCLVLDLYLPGISGFEL 69 Query: 65 VHRLEQRGDAIPVIFISGYGTIPTTVQAMKAGAHEFLTKPIEDERLLGAVEEALTVAG 122 + +++ +G IP+IFI+ V+ G +L KP + L V++ L AG Sbjct: 70 LEQIKAKGMDIPIIFITAQDDEKIRVRVEGVG-KLYLPKPFTGQSLASKVKDCLKHAG 126 >gi|152983037|ref|YP_001352599.1| two-component response regulator [Janthinobacterium sp. Marseille] Length = 209 Score = 73.2 bits (178), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/200 (26%), Positives = 99/200 (49%), Gaps = 10/200 (5%) Query: 5 VYVVDDDGMVRTALLRLLAAAGY--TARGFASADEFLQVPLPSTPCCLLLDMKMPGADGF 62 + + DD ++R L L + G ++ + ++ + +LLDM MPG G Sbjct: 4 ILMADDHALMREGLKHLFSVVGGIDVVAEASTGPQVFELLRRTDVDLILLDMTMPGISGA 63 Query: 63 DVVHRLEQRGDAIPVIFISGYGTIPTTVQAMKAGAHEFLTKPIEDERLLGAVEEALTVAG 122 ++H + + A ++ +S + + +A+ AGA ++TK + + L+ A+ + G Sbjct: 64 TLIHHIRSQKTAPNILVLSMHDEVQFARRALDAGASGYITKDTDPQTLIDAIHR-VAEGG 122 Query: 123 RQLHKRV------EHAANAS-RLEKLTPREREVLELAIGGLLNKQIATELGISEITVKVH 175 R + + + +H A E L+ RE E+ +L + G +IA EL IS TV H Sbjct: 123 RFISRGLAEEMLFDHGTRARPSHELLSTREYEIFQLLVHGRGVNEIADELSISNKTVSTH 182 Query: 176 KRRVMDKMQTKTLADLVRAA 195 K R+M+KM+ + ++ L+R A Sbjct: 183 KTRLMEKMKCENVSQLIRYA 202 >gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(I) [Janthinobacterium sp. Marseille] Length = 506 Score = 72.0 bits (175), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 63/114 (55%) Query: 5 VYVVDDDGMVRTALLRLLAAAGYTARGFASADEFLQVPLPSTPCCLLLDMKMPGADGFDV 64 +++VDDD +R L + LA + F++A + L+ P L+ D++MPG G ++ Sbjct: 4 IWIVDDDESIRWVLEKALARENLATKSFSNARDALEALKTGAPQVLVSDIRMPGESGLEL 63 Query: 65 VHRLEQRGDAIPVIFISGYGTIPTTVQAMKAGAHEFLTKPIEDERLLGAVEEAL 118 + ++ + +PVI I+ + + + V A + GA E+L KP + + +G + AL Sbjct: 64 LQAVKAKHPGLPVIIITAFSDLDSAVAAFQGGAFEYLAKPFDIDHAVGLIRRAL 117 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 441,005 Number of extensions: 17093 Number of successful extensions: 137 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 147 Number of HSP's successfully gapped: 18 Length of query: 206 Length of database: 1,221,021 Length adjustment: 79 Effective length of query: 127 Effective length of database: 928,958 Effective search space: 117977666 Effective search space used: 117977666 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)