BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4398.p
         (249 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981919|ref|YP_001352270.1| hypothetical protein mma_0580 [...   234   4e-63

>gi|152981919|ref|YP_001352270.1| hypothetical protein mma_0580
           [Janthinobacterium sp. Marseille]
          Length = 253

 Score =  234 bits (597), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 117/216 (54%), Positives = 159/216 (73%)

Query: 23  RNCLQSSGLAFLAAYVDTLGFIALFGLFTAHVTGNFILIGAALADTSQMSILLKFLAFPA 82
           R+ +Q+S L FLA YVDTLGF+ALFGLFTAHVTGNF+LIGA +A      +LLK LAFPA
Sbjct: 7   RHKIQNSSLGFLAGYVDTLGFVALFGLFTAHVTGNFVLIGAEMAHPQGGPLLLKILAFPA 66

Query: 83  FILGVAVARVFIAAIQRAHGRALAWSLLLQLVLLIGFMLCGIAAAPVQSPTAGWVMAAGL 142
           F+ GV  AR+FIA++ +    AL ++ +LQLVLLI FM+ G  A+P+ +        AG+
Sbjct: 67  FVFGVVFARLFIASLLKRGRHALWYAYILQLVLLIAFMVLGYLASPIGNEPTLMAELAGI 126

Query: 143 LGTASMGVHNAISRLLLSHLAPTSLMTGNVTQVVIDMVDMLRGAADAGTTERCVKFVWPV 202
           +G  +MG H+A  RLLL HLAPT++MTGNVTQ+VID VD++ G+A+    +RC+KF+WPV
Sbjct: 127 VGAMAMGTHSASGRLLLPHLAPTAMMTGNVTQLVIDSVDVIFGSANDAVKQRCIKFLWPV 186

Query: 203 LSFGVGAIAAAFAYHAIGFAGLIVPVLILVAMIVWE 238
           ++FGVGA+ AAFAY   GF  L++P+ IL+ ++  E
Sbjct: 187 VAFGVGAVGAAFAYQYAGFLALLLPIFILLYLMYIE 222


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.329    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 474,534
Number of extensions: 15421
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 168
Effective length of database: 921,564
Effective search space: 154822752
Effective search space used: 154822752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)