BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4396.p
         (217 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981574|ref|YP_001351926.1| phosphoglycolate phosphatase [J...    59   3e-10

>gi|152981574|ref|YP_001351926.1| phosphoglycolate phosphatase
           [Janthinobacterium sp. Marseille]
          Length = 223

 Score = 58.5 bits (140), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 83/186 (44%), Gaps = 7/186 (3%)

Query: 3   ITHFLFDLDGTLMDSDALHHAAFNTILARWDRS-IDVDYYKTHIMGASNAMIFGHLFPGM 61
           I   + DLDGT++ +    H A N + A    + +D+D   + +   +  ++   +    
Sbjct: 5   IRGVIIDLDGTMLHTAQDLHIAINRMRAGLGLAPLDLDTAISFVGKGAENLVRKTIGVDF 64

Query: 62  PASEYQPLAEEKEQLFRSQ---LDQQVAPT-PGIERLLEHIARIGGRSAVVTNAPRANAE 117
             SE +    E   LF      ++ + A   PG+   L+ +   G R A VTN P A   
Sbjct: 65  SDSEVEQRFAEAMALFEQHYFDVNGEFATAYPGVHEGLQEMQAKGLRLACVTNKPIAFTL 124

Query: 118 LMLKATGLAGRFDTLVIGDELARAKPDPLPYLTALQVLGGQPQQAVAFEDSSSGVKA--A 175
            +LK TGL   F+ +  GD  A+ KPDP+  L         P Q VA  DS +  +A  A
Sbjct: 125 PLLKKTGLHDYFEIIYGGDSFAKKKPDPMQLLQVCADFELAPAQIVAIGDSINDSQAARA 184

Query: 176 SGAKVW 181
           +G KV 
Sbjct: 185 AGCKVL 190


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 504,783
Number of extensions: 19234
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 137
Effective length of database: 925,261
Effective search space: 126760757
Effective search space used: 126760757
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)