BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4395.p
         (366 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982272|ref|YP_001353339.1| hypothetical protein mma_1649 [...   298   4e-82

>gi|152982272|ref|YP_001353339.1| hypothetical protein mma_1649
           [Janthinobacterium sp. Marseille]
          Length = 331

 Score =  298 bits (763), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 177/304 (58%), Positives = 215/304 (70%), Gaps = 25/304 (8%)

Query: 40  SFILVMLGFGLGFSSISPWSGQGISAKAIGYSTAGWLLFTQIAASAIGGFLAGRLRVKWA 99
           SF+LV+LGFGLGFSS+SPWSG G+SA+AIGYST  W+ FTQIAASAIGG++AGRLRVKW 
Sbjct: 37  SFVLVILGFGLGFSSVSPWSGSGLSAQAIGYSTIIWVAFTQIAASAIGGYIAGRLRVKWT 96

Query: 100 GLHTREVYFRDTAHGLLAWAVASLATAALLGSAVGSVISGGAKTLGAAGGALGAGAVTTA 159
            +H  EVYFRDTAHG LAWAVASLATAALL SA GSV++GGAK  G+AG A+ A      
Sbjct: 97  NIHNDEVYFRDTAHGFLAWAVASLATAALLSSAFGSVLAGGAKVAGSAGAAVVAVGGAGM 156

Query: 160 AAMGPDGAQQAGNLADRASGYFIDSMFRTGSNAAAPSTGAAPAAPLTPPAGSDAASASAM 219
           A+ G       GN  D  +GYF+DS+FR       P+T AA A       G+        
Sbjct: 157 ASEG------TGNAGDGMAGYFVDSLFR-------PATSAAAANDGQAANGT-------- 195

Query: 220 APLAAPTPADGRELSSAQRMEVARVFGYSLAKQQLADNDKRYLGQLVARHTGLAQADAEK 279
           A LA   PA    ++ AQR EV R+F  ++    L D DK YL QL+A+ TG++QAD EK
Sbjct: 196 ATLATEAPA----VTPAQRAEVTRIFANAIRVGSLPDADKNYLTQLLAKRTGMSQADVEK 251

Query: 280 RVADTFAAYQRNLDDAAAKAKEAADAARKAAAYASLWMFLALLCGAFIASLLATYGGRLR 339
           R+ + +A Y++N+DD  AKAKEAAD+ARKAAAY SLWMF+ALLCGAF+AS  AT+GGRLR
Sbjct: 252 RINEIYATYKKNVDDGIAKAKEAADSARKAAAYGSLWMFIALLCGAFVASFTATFGGRLR 311

Query: 340 DRNE 343
           DR E
Sbjct: 312 DRIE 315


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.130    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 571,606
Number of extensions: 16908
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 281
Effective length of database: 906,776
Effective search space: 254804056
Effective search space used: 254804056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)