BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4394.p (295 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducibl... 91 9e-20 gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 88 6e-19 gi|152981664|ref|YP_001352876.1| LysR family transcriptional reg... 87 9e-19 gi|152982593|ref|YP_001352341.1| LysR family transcriptional reg... 86 3e-18 gi|152981488|ref|YP_001352078.1| LysR family transcriptional reg... 75 4e-15 >gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducible genes activator [Janthinobacterium sp. Marseille] Length = 331 Score = 90.9 bits (224), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 91/176 (51%), Gaps = 6/176 (3%) Query: 1 MDFRDLKYFAVIAEEGHVGRAAERLFKTQPALTKCIDRLEEQLGAPLFERAGRGIRLTAV 60 M +LKY +A E H G AAE F QP L+ I +LE++LG LFER G I +T + Sbjct: 17 MTLTELKYIVAVAREKHFGHAAEACFVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 76 Query: 61 GQALLNRARQI---SLMMDETAREIGDYAHGREGNIRLGCIPTLAEHILPGLCQELLREA 117 G ++ +A ++ + + E A++ D G RLG I T+A ++LP L + ++ Sbjct: 77 GAQIVAQAERVLEQTAAIKEIAKQNKD---PLVGPFRLGIIYTIAPYLLPPLVKTIIERV 133 Query: 118 PKVTIELKVSMNDVLLAGLKTGELDIVLGPMIQEDEVFHTEEIMQDQMVVMASPHH 173 P++ + L+ + LL L+ GELD + + D+ + + + VV HH Sbjct: 134 PQMPLVLQENFTVKLLELLRQGELDAAIVALPFPDQGLLVQPVYDEPFVVAVPKHH 189 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 88.2 bits (217), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 76/294 (25%), Positives = 137/294 (46%), Gaps = 10/294 (3%) Query: 1 MDFRDLKYFAVIAEEGHVGRAAERLFKTQPALTKCIDRLEEQLGAPLFERAGRGIRLTAV 60 M+ R L+YF A+ RA+E L TQP L+ I ++E++LG LF+R GR ++LT Sbjct: 1 MELRHLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTA 60 Query: 61 GQALLNRARQISLMMDETAREIGDYAHGREGNIRLGCIPTLAEHILPGLCQELLREAPKV 120 G+ A++ L +D + + + + G + G + + LP + + + P + Sbjct: 61 GELFQVYAKRALLEVDAGLDALNELENLKHGRVTFGVLSSFGTFHLPPILADFNKVYPGI 120 Query: 121 TIELKVSMNDVLLAGLKTGELDIVLGPMIQEDEVFHTEEIMQDQMVVMASPHHPIF-ERR 179 I + + + L G+L + E + E + + ++ HHP+ Sbjct: 121 KITVLRLRSGEIEERLLDGDLHFGVAYAPSSTEQINVEPLFTVPLALVVGDHHPLVGSAG 180 Query: 180 IKLRHLLEYQWVLPAQSVLSRQWLDNVFDRHHL-PRPTVQIMPTVLNMIMPLIE--RSNL 236 I L L E++ V+ + SR+ +D + + + PR ++ +N I P++ R + Sbjct: 181 ITLNELNEHELVMLSDEYNSRKMMDAILLANGITPRIVME-----MNAIEPILATVRHSS 235 Query: 237 LGFASKLNLQAGRGHLREVVLKETTMLRRMGLTYRRDIYLSPAAQRLLTIIRRR 290 L NL L +V L T+ +GL RR+ +LS AA+ L+ IR+R Sbjct: 236 LATILSANLVDEMPGLHQVPLTP-TVTHTVGLFTRRNSHLSAAARALVDTIRQR 288 >gi|152981664|ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 87.4 bits (215), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 105/197 (53%), Gaps = 6/197 (3%) Query: 1 MDFRDLKYFAVIAEEGHVGRAAERLFKTQPALTKCIDRLEEQLGAPLFERAGRGIRLTAV 60 +D R L+YF ++AEEGH+ +AA+R+ QP L++ I LE++LG LF R RG+ LT Sbjct: 4 IDLRLLRYFVIVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMELTES 63 Query: 61 GQALLNRARQISLMMDETAREIGDYAHGREGNIRLGCIPTLAEH-ILPGLCQELLREAPK 119 GQALL AR I ++ T + + G G + +G + A H +P + + +++P Sbjct: 64 GQALLIDARLILEQVNTTIEGVRRISLGESGRLAVGFTESAALHPFIPAVIRAFRQKSPG 123 Query: 120 VTIELKVSMNDVLLAGLKTGELDIVL--GPMIQEDEVFHTEEIMQDQMVVMASPHHPIFE 177 V + ++ S + L+ L+ LD+ P I E ++ ++M+V H + + Sbjct: 124 VIMAVEESNTNELVEDLRHNRLDVAFIRSP-IGSAAGLKMETMLVEEMIVALPITHRLAQ 182 Query: 178 RR--IKLRHLLEYQWVL 192 RR + L L E ++L Sbjct: 183 RRKSLPLTALAEDDFIL 199 >gi|152982593|ref|YP_001352341.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 297 Score = 85.9 bits (211), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 53/145 (36%), Positives = 74/145 (51%) Query: 1 MDFRDLKYFAVIAEEGHVGRAAERLFKTQPALTKCIDRLEEQLGAPLFERAGRGIRLTAV 60 ++ R L++F +AEE H GRAA RL TQP L++ I LE LG LF R R + LT Sbjct: 3 IELRQLRHFVTVAEEMHFGRAALRLHMTQPPLSQSIQALEALLGVQLFRRTSRSVALTPA 62 Query: 61 GQALLNRARQISLMMDETAREIGDYAHGREGNIRLGCIPTLAEHILPGLCQELLREAPKV 120 G ALL A++I + A G G + L + T +LP +E P+V Sbjct: 63 GIALLPEAQRILQQTAALPDLMRRAASGASGRLSLAFVSTADYSVLPHFLREFREAYPQV 122 Query: 121 TIELKVSMNDVLLAGLKTGELDIVL 145 I+L+ + DV L L G +D+ L Sbjct: 123 EIDLREATTDVQLDELAQGRIDVGL 147 >gi|152981488|ref|YP_001352078.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 326 Score = 75.5 bits (184), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 87/190 (45%), Gaps = 2/190 (1%) Query: 4 RDLKYFAVIAEEGHVGRAAERLFKTQPALTKCIDRLEEQLGAPLFERAGRGIRLTAVGQA 63 R LK F +A RAAE L TQPA++ + +LEE G LFE+ G+ I LT G Sbjct: 7 RQLKVFETVARHLSFSRAAEELHLTQPAVSTQVKKLEEHAGLALFEQLGKKIYLTPGGSE 66 Query: 64 LLNRARQISLMMDETAREIGDYAHGREGNIRLGCIPTLAEHILPGLCQELLREAPKVTIE 123 LL+ +R I E + + G + + I + ++ P L E R VT+ Sbjct: 67 LLHYSRTIIQQFQEAEDAMTQFKGITGGKLNVAVI-SAGDYFFPRLLVEFARSHQGVTLN 125 Query: 124 LKVSMNDVLLAGLKTGELDIVLGPMIQEDEVFHTEEIMQDQMVVMASPHHP-IFERRIKL 182 L V + LL + + DI + D E V++A+P HP + ++ I + Sbjct: 126 LSVHNREGLLNQMTSNLTDIAIMVRPPTDMDTINEAFAPHPYVIVAAPDHPLVSQKNIPM 185 Query: 183 RHLLEYQWVL 192 L++ +V+ Sbjct: 186 SRLMQEPFVV 195 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.325 0.140 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 654,422 Number of extensions: 25684 Number of successful extensions: 137 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 132 Number of HSP's successfully gapped: 29 Length of query: 295 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 212 Effective length of database: 914,170 Effective search space: 193804040 Effective search space used: 193804040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)