BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4392.p
         (446 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980910|ref|YP_001353544.1| major facilitator transporter [...   338   5e-94
gi|152980838|ref|YP_001354006.1| major facilitator transporter [...    74   1e-14

>gi|152980910|ref|YP_001353544.1| major facilitator transporter
           [Janthinobacterium sp. Marseille]
          Length = 436

 Score =  338 bits (866), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 193/429 (44%), Positives = 273/429 (63%), Gaps = 9/429 (2%)

Query: 9   IASAPVSTAAVS----EQATMKKVMRRLIPFILLCYVVSYLDRINVGFAALTMNKELGLT 64
           ++S P+ST A      E +   KV  RL+PF+ LCYV +YLDR+NVGFA L+M  +L  +
Sbjct: 1   MSSIPLSTTASDRTKLEDSIYAKVTLRLLPFLFLCYVAAYLDRVNVGFAKLSMLNDLQFS 60

Query: 65  PSQFGLGAGLFFIGYFFFEIPSNLALHRFGARMWISRIMISWGLISMATAFVVGPKSFAL 124
            + +GLGAG+FFIGYF FE+PSN+ +H+ GAR WI+RIMI+W ++S AT FV  P  F +
Sbjct: 61  ETIYGLGAGIFFIGYFLFEVPSNIIMHKVGARRWIARIMITWSILSAATMFVTTPTMFYV 120

Query: 125 ARFLLGMAEAGFTPGIYLYFTQWFPGPWRAKATAFFLIGIPVANIIGSPLSGALME-LHG 183
            RFLLG+AEAGF PGI LY T WFP   R +  A F+IGIP+A ++G PLSG +M    G
Sbjct: 121 IRFLLGVAEAGFFPGIVLYLTYWFPTSRRGRMNALFMIGIPIAGVVGGPLSGWIMNAFAG 180

Query: 184 MWGFQGWQVLLLLEALPAVLLGVLCLFLLPDRPAKANWLNPAEKQWLENELSTEQNVLAQ 243
           M G+ GWQ L LLEALP++ LG++ LF LP+    ++WL+  EK  LE  ++ + +V  +
Sbjct: 181 MNGWHGWQWLFLLEALPSLALGIMTLFYLPNSIRASSWLSENEKAILEANIAKDNSVGDK 240

Query: 244 RHGNKLKDAFTNWRVFALAGANFCGIIGSLSIGLWLPQIIKEFGL-PAHQVGLVAALPYV 302
            H   +   FTN +V+ +A   FC ++G   I  +LP ++K  G+  A  VGL+ A+PY 
Sbjct: 241 SH--SVAGVFTNPKVWLMAAIYFCCMMGLYGISFYLPTLVKASGVKDALDVGLLTAIPYT 298

Query: 303 VGAIAMTLWARLANRSQRRLLFVAGAIVLAAVSLAVSA-FLHTPLLKMLAITVAVASILS 361
            G IA  L AR A+R + R    A A  L  + L +S  +    +L ++A+++  A +LS
Sbjct: 299 CGVIATLLVARSADRMRERRWHFAIASALGGLGLFLSTVYGDNVVLALMALSLGTAGMLS 358

Query: 362 FQATFWAIPSGFLTGRAAAGGLALIVSIGNLGGFVGPSVIGFIREATQGFTYPLLFVAGA 421
               FW  PS  L G AAA G+ LI S+GNL GFV P+++G++++ T      + FVAGA
Sbjct: 359 TMPVFWTYPSAILGGAAAAAGIGLINSVGNLAGFVSPTIVGWLKDVTGSTNAGMYFVAGA 418

Query: 422 LLLGAVITL 430
           L+LGA + L
Sbjct: 419 LVLGACLAL 427


>gi|152980838|ref|YP_001354006.1| major facilitator transporter
           [Janthinobacterium sp. Marseille]
          Length = 462

 Score = 74.3 bits (181), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 96/425 (22%), Positives = 171/425 (40%), Gaps = 39/425 (9%)

Query: 7   NFIASAPVSTAAVSEQATMKKVMRRLIPFILLCYVVSYLDRINVGFAALTMNKELGLTPS 66
           N + +A +S A   E+  +    R L   I L +    LD   + +   ++  E GLT +
Sbjct: 4   NDLETAAISAADRLERLPICNYHRFLFMVIALAFFFDNLDLAMMAYLLGSIKTEFGLTTA 63

Query: 67  QFGLGAGLFFIGYFFFEIPSNLALHRFGARMWISRIMISWGLISMATAFVVGPKSFALAR 126
           Q G+     F+G     + S +   +FG +      MI WG+ S   +    P S A+ R
Sbjct: 64  QAGMLGSASFVGMALGAVSSGMLADKFGRKPIFQISMIIWGVASYLCSTANDPVSLAIYR 123

Query: 127 FLLGMAEAGFTPGIYLYFTQWFPGPWRAKATAFFLIGIPVANIIGSPLSGALMELHGMWG 186
            LLG+      P      +++ P   R K  A      P+A I    +S  ++  +    
Sbjct: 124 VLLGIGMGMELPLAQTLLSEFIPAKRRGKYLALMDGNWPIAFICAGLMSYYVLASY---- 179

Query: 187 FQGWQVLLLLEALPAVLLGVLCLFLLPDRPAKANWLNPAEKQ--------WLENELSTEQ 238
              W+ + LL A+PAV L V+  + +P+ P    WL    +          +E E+    
Sbjct: 180 --SWRTMFLLGAIPAVFLFVIRRY-VPESP---RWLESKGRHAEASNIVDGIEGEVKKIL 233

Query: 239 NV-----LAQRHGNKLKDAF---------TNWRVFALAGANFCGIIGSLSIGLWLPQIIK 284
            V     + Q    + ++AF            R   + G  F  ++G   +  W+  +++
Sbjct: 234 KVDSLPPIVQTAMMRDQEAFGIKVLWSPVYRRRTLTVWGLWFFALLGFYGLNTWIGALLQ 293

Query: 285 EFGLPAHQVGLVAALPYVVGAIAMTLWARLANRSQRRLLFVAGAIVLAAVSLAVSAFLHT 344
           + GL   +  ++  +    G I   LWA        R       ++  AV + +  ++ +
Sbjct: 294 QSGLEVTK-SVLYTVYIACGGIPGFLWAAWVVERWGRKPACVSTLLGGAVMVFIYGWVAS 352

Query: 345 PLLKMLAITVAVASILSFQATFWAI-----PSGFLTGRAAAGGLALIVSIGNLGGFVGPS 399
                +A+  A A +  F    WA+     P  + T RA A G  +  ++G LG  +GP+
Sbjct: 353 SAHTFIALVSAGAMMQFFMFGMWAVLYTYTPELYPT-RARASGCGMASTVGRLGSLLGPT 411

Query: 400 VIGFI 404
           ++G I
Sbjct: 412 IVGVI 416


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.327    0.140    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 903,566
Number of extensions: 35562
Number of successful extensions: 206
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 4
Length of query: 446
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 360
Effective length of database: 903,079
Effective search space: 325108440
Effective search space used: 325108440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)