BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4388.p
         (443 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980910|ref|YP_001353544.1| major facilitator transporter [...   292   3e-80
gi|152980838|ref|YP_001354006.1| major facilitator transporter [...    58   9e-10

>gi|152980910|ref|YP_001353544.1| major facilitator transporter
           [Janthinobacterium sp. Marseille]
          Length = 436

 Score =  292 bits (747), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 173/427 (40%), Positives = 245/427 (57%), Gaps = 6/427 (1%)

Query: 3   TIQDEKRLERETVRKVTWRLLPFLMLCYLFAFIDRGNIGMAALQMNHDLGLSPKMFGFAS 62
           T  D  +LE     KVT RLLPFL LCY+ A++DR N+G A L M +DL  S  ++G  +
Sbjct: 9   TASDRTKLEDSIYAKVTLRLLPFLFLCYVAAYLDRVNVGFAKLSMLNDLQFSETIYGLGA 68

Query: 63  SLFFIAYFIFEVPSNLALQKFGARKWLARIMITWGLISASTALVQGPHSLYVARFILGAA 122
            +FFI YF+FEVPSN+ + K GAR+W+ARIMITW ++SA+T  V  P   YV RF+LG A
Sbjct: 69  GIFFIGYFLFEVPSNIIMHKVGARRWIARIMITWSILSAATMFVTTPTMFYVIRFLLGVA 128

Query: 123 EAGFFPGVVLYLTYWVPSAYRARMVALFMVAIPAASFVASPVSALLLQ-MDGIGGLRGWH 181
           EAGFFPG+VLYLTYW P++ R RM ALFM+ IP A  V  P+S  ++    G+ G  GW 
Sbjct: 129 EAGFFPGIVLYLTYWFPTSRRGRMNALFMIGIPIAGVVGGPLSGWIMNAFAGMNGWHGWQ 188

Query: 182 WLFVLEGLPTVLLGVVCLMFLTDRPEQARWLDEHQRNWLVATMNREAASRAAKQHIPLWK 241
           WLF+LE LP++ LG++ L +L +    + WL E+++  L A + ++  S   K H  +  
Sbjct: 189 WLFLLEALPSLALGIMTLFYLPNSIRASSWLSENEKAILEANIAKD-NSVGDKSH-SVAG 246

Query: 242 LFSQPHVWGMALVCACASAAGSVLNVWQPQLLKSFGL-SVMQTGLVNSIPYLIASVLMVW 300
           +F+ P VW MA +  C       ++ + P L+K+ G+   +  GL+ +IPY    +  + 
Sbjct: 247 VFTNPKVWLMAAIYFCCMMGLYGISFYLPTLVKASGVKDALDVGLLTAIPYTCGVIATLL 306

Query: 301 WGRHSDRSGERRWHTAIPLMLIGGGLACATLIHSLIPVVLM-LTLVLIGAYCFKGPFWAM 359
             R +DR  ERRWH AI   L G GL  +T+    + + LM L+L   G       FW  
Sbjct: 307 VARSADRMRERRWHFAIASALGGLGLFLSTVYGDNVVLALMALSLGTAGMLSTMPVFWTY 366

Query: 360 ATNWLATGSVAAGLAGINAVSNLIGGGLMVNVYGWVKGATGSFALALLPLVGLSVLSVAI 419
            +  L   + AAG+  IN+V NL  G +   + GW+K  TGS    +  + G  VL   +
Sbjct: 367 PSAILGGAAAAAGIGLINSVGNL-AGFVSPTIVGWLKDVTGSTNAGMYFVAGALVLGACL 425

Query: 420 LLFLSRK 426
            L   R 
Sbjct: 426 ALLQPRS 432


>gi|152980838|ref|YP_001354006.1| major facilitator transporter
           [Janthinobacterium sp. Marseille]
          Length = 462

 Score = 58.2 bits (139), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 85/217 (39%), Gaps = 14/217 (6%)

Query: 4   IQDEKRLERETVRKVTWRLLPFLMLCYLFAFIDRGNIGMAALQMNHDLGLSPKMFGFASS 63
           I    RLER  +      L   + L + F  +D   +      +  + GL+    G   S
Sbjct: 11  ISAADRLERLPICNYHRFLFMVIALAFFFDNLDLAMMAYLLGSIKTEFGLTTAQAGMLGS 70

Query: 64  LFFIAYFIFEVPSNLALQKFGARKWLARIMITWGLISASTALVQGPHSLYVARFILGAAE 123
             F+   +  V S +   KFG +      MI WG+ S   +    P SL + R +LG   
Sbjct: 71  ASFVGMALGAVSSGMLADKFGRKPIFQISMIIWGVASYLCSTANDPVSLAIYRVLLGIGM 130

Query: 124 AGFFPGVVLYLTYWVPSAYRARMVALFMVAIPAASFVASPVSALLLQMDGIGGLRGWHWL 183
               P     L+ ++P+  R + +AL     P A   A  +S  +L          W  +
Sbjct: 131 GMELPLAQTLLSEFIPAKRRGKYLALMDGNWPIAFICAGLMSYYVLAS------YSWRTM 184

Query: 184 FVLEGLPTVLLGVVCLMFLTDR--PEQARWLDEHQRN 218
           F+L  +P V L      F+  R  PE  RWL+   R+
Sbjct: 185 FLLGAIPAVFL------FVIRRYVPESPRWLESKGRH 215


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.328    0.138    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 954,676
Number of extensions: 38541
Number of successful extensions: 178
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 3
Length of query: 443
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 357
Effective length of database: 903,079
Effective search space: 322399203
Effective search space used: 322399203
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)