BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4382.p
         (398 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981425|ref|YP_001352421.1| D-alanyl-D-alanine-endopeptidas...   205   4e-54
gi|152980485|ref|YP_001353523.1| D-alanyl-D-alanine carboxyopept...   173   2e-44
gi|152981033|ref|YP_001354938.1| D-alanyl-D-alanine carboxypepti...    55   6e-09

>gi|152981425|ref|YP_001352421.1| D-alanyl-D-alanine-endopeptidase
           [Janthinobacterium sp. Marseille]
          Length = 436

 Score =  205 bits (521), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 111/234 (47%), Positives = 163/234 (69%), Gaps = 4/234 (1%)

Query: 161 VLDEQTNTPLFERDADTVAPIASVTKLMTAMVWLDQKPLPLANRLEVSEDDLDTLKFTHS 220
           VLD+ T+  LFE++A+   PIAS+TKLMT +V ++ +   +   LEV+E+D+D  K + S
Sbjct: 189 VLDQSTSAVLFEKNANVTLPIASITKLMTGLVVVEAQQ-DMNEILEVTEEDIDREKNSSS 247

Query: 221 RLNVGASLSRADMLHIALMSSENRAAAAMSRDYPGGRPAFIAAMNARAQALGMSHTHFEN 280
           RL VG+ LSRA+MLHIALMSSENRAA+A+ R YPGG  AF+AAMNA+A++LGM+ TH+ +
Sbjct: 248 RLRVGSQLSRANMLHIALMSSENRAASALGRHYPGGIRAFVAAMNAKARSLGMNGTHYVD 307

Query: 281 ATGLSPENVSTPRELAEMVKAANRYQLIRNDSLDKQKMINIGRGQLQYINSNRLIRYGQV 340
           +TGLS  NV++  +LA++V AA+ + ++R  S D + ++  G   LQY NSNRL+     
Sbjct: 308 STGLSSNNVASAADLAKLVIAASNHSILRQYSTDTKYVVEPGGRALQYANSNRLVNNPDW 367

Query: 341 NATVQKTGFINESGHNMVLRLLVHDRRPVIVTMLGSGSADGSRL-DGVRIAKWL 393
              +QKTG+I+E+G  +V++  ++  RP+++  L S     SRL D  RI KWL
Sbjct: 368 EIGIQKTGYISEAGRCLVMQANING-RPIVMIFLDS-KGKLSRLGDAARIRKWL 419


>gi|152980485|ref|YP_001353523.1| D-alanyl-D-alanine
           carboxyopeptidase [Janthinobacterium sp. Marseille]
          Length = 274

 Score =  173 bits (438), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/225 (41%), Positives = 142/225 (63%), Gaps = 1/225 (0%)

Query: 156 SRGIYVLDEQTNTPLFERDADTVAPIASVTKLMTAMVWLDQKPLPLANRLEVSEDDLDTL 215
           S+   V+DE T   +FE++A  + PIAS+TKLMTAMV LD KP  +  R+ ++EDD+DTL
Sbjct: 24  SKHAIVIDEGTGQVVFEKNATDIVPIASLTKLMTAMVVLDAKP-DMHERISITEDDVDTL 82

Query: 216 KFTHSRLNVGASLSRADMLHIALMSSENRAAAAMSRDYPGGRPAFIAAMNARAQALGMSH 275
           KF+ SR+ VGA  SR ++L +ALMSS+NRAA A++R YPGG   F  A+ ++A  L +  
Sbjct: 83  KFSSSRVPVGAVFSRHELLELALMSSDNRAAHALARSYPGGLEHFKVAVRSKAHMLNLRR 142

Query: 276 THFENATGLSPENVSTPRELAEMVKAANRYQLIRNDSLDKQKMINIGRGQLQYINSNRLI 335
           T+ E  TGLSP N ST  +LA++  AA++Y  I   +     +I++     QY N+NRL+
Sbjct: 143 TNIEEPTGLSPYNTSTASDLAKLALAASKYPDIERITTVSNDLIDVNGRMRQYHNTNRLV 202

Query: 336 RYGQVNATVQKTGFINESGHNMVLRLLVHDRRPVIVTMLGSGSAD 380
                  ++ KTG+  E+G  +++R+    R  ++V +   G+A+
Sbjct: 203 GDKNWTISLSKTGYTQEAGRCIIMRVHAAGRDAIMVLLNARGNAN 247


>gi|152981033|ref|YP_001354938.1| D-alanyl-D-alanine
           carboxypeptidase [Janthinobacterium sp. Marseille]
          Length = 382

 Score = 55.5 bits (132), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 99/212 (46%), Gaps = 27/212 (12%)

Query: 161 VLDEQTNTPLFERDADTVAPIASVTKLMTAMVW---LDQKPLPLANRLEVSE-----DDL 212
           +LD  +N  L   + D     AS+TKLMTA V    +  K L L   + +S      D  
Sbjct: 35  LLDATSNQVLASNEPDMRIEPASLTKLMTAYVAFTAIQDKKLDLNQMITISTNAWKVDPS 94

Query: 213 DTLKFTHSRLNVGASLSRADMLHIALMSSENRAAAAMSRDYPGGRPAFIAAMNARAQALG 272
            +  F   R+ V  +    D+L+  ++ S N AA A++    G   AF+A MN  A+ +G
Sbjct: 95  SSKMFIEPRVPVKVN----DLLYGLIVQSGNDAAVAIAEAVAGTEDAFVALMNREAERMG 150

Query: 273 MSHTHFENATGL-SPENVSTPRELAEMVKAANRYQLIRNDSLDKQKMINIGRGQLQYI-- 329
           M  THF N  GL S  N ST R+L+ +        LI ND  +  K+ +        I  
Sbjct: 151 MKSTHFANPHGLPSASNYSTARDLSVLAS-----HLI-NDHPEFYKIYSTKEYTYNNIKQ 204

Query: 330 -NSNRLIRYGQVNATVQ--KTGFINESGHNMV 358
            N NRL+    ++ TV   KTG+   +G+ ++
Sbjct: 205 PNRNRLL---WLDPTVDGMKTGYTQGAGYCLI 233


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.129    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 690,035
Number of extensions: 23665
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 3
Length of query: 398
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 313
Effective length of database: 906,776
Effective search space: 283820888
Effective search space used: 283820888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)