BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4381.p (501 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981055|ref|YP_001351702.1| response regulator/GGDEF domain... 129 3e-31 gi|152982609|ref|YP_001351719.1| hypothetical protein mma_0029 [... 114 1e-26 gi|152981991|ref|YP_001353685.1| hypothetical protein mma_1995 [... 108 6e-25 gi|152982708|ref|YP_001353141.1| hypothetical protein mma_1451 [... 100 2e-22 gi|152982100|ref|YP_001354823.1| hypothetical protein mma_3133 [... 100 2e-22 >gi|152981055|ref|YP_001351702.1| response regulator/GGDEF domain-containing protein [Janthinobacterium sp. Marseille] Length = 341 Score = 129 bits (325), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 68/182 (37%), Positives = 106/182 (58%), Gaps = 2/182 (1%) Query: 300 LREEFFRRGKLDLQLEQQARTDKLTSLLNRRALDEALQEAWHKSQRNSTTRFAVLFADVD 359 LRE + K + +L++ TD LT + NRR D+ L W +++R ++L DVD Sbjct: 156 LRESQQQLQKSNFELQRLTNTDGLTGIANRRYFDDYLSAEWKRARREQQ-ELSILLIDVD 214 Query: 360 FFKLYNDTYGHKAGDYALVAVARCIQGAVARQCDKTGRFGGEEFVALLDEADAQGALHVA 419 FKLYNDTYGH AGD L VA+ ++ + R D + RFGGEEF +L + GA+ Sbjct: 215 NFKLYNDTYGHVAGDLVLKQVAKSLEASAMRPADLSARFGGEEFAIILPATGSNGAVISG 274 Query: 420 SNILTSLQALKIPHERSPFGR-LSLSIGVACLDRDLHQSMEEVVKAADEALYQAKRAGRN 478 + +++AL+IPH + G L++S+G A + Q ++++ AD+ LY+AK G++ Sbjct: 275 KKVCAAVEALRIPHAHAAIGEWLTVSVGAATITPQAEQVPNDLIELADKRLYRAKELGKH 334 Query: 479 RV 480 RV Sbjct: 335 RV 336 >gi|152982609|ref|YP_001351719.1| hypothetical protein mma_0029 [Janthinobacterium sp. Marseille] Length = 313 Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 67/174 (38%), Positives = 97/174 (55%), Gaps = 4/174 (2%) Query: 310 LDLQ--LEQQARTDKLTSLLNRRALDEALQEAWHKSQRNSTTRFAVLFADVDFFKLYNDT 367 +DLQ LE + D LT + NRR D L+ W + NS +++ D+D+FK YND Sbjct: 137 IDLQKELETLSFKDGLTGVANRRMFDSVLELEWANAM-NSKRPLSIILLDIDYFKQYNDH 195 Query: 368 YGHKAGDYALVAVARCIQGAVARQCDKTGRFGGEEFVALLDEADAQGALHVASNILTSLQ 427 YGH GD+ L VA+ + A RQ D GRFGGEEF+ +L E + + AL VA + Sbjct: 196 YGHIQGDHCLKQVAKTLNNAAIRQRDFFGRFGGEEFILILPETNEKSALTVAERCRMLIF 255 Query: 428 ALKIPHERSPFGR-LSLSIGVACLDRDLHQSMEEVVKAADEALYQAKRAGRNRV 480 +IPHE+S + L++S+GV + + ++ AD LY AK+ GRN + Sbjct: 256 KEQIPHEKSAVSQLLTISLGVHTVIPSYGDEALKFIEEADRRLYLAKQKGRNCI 309 >gi|152981991|ref|YP_001353685.1| hypothetical protein mma_1995 [Janthinobacterium sp. Marseille] Length = 876 Score = 108 bits (271), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 71/185 (38%), Positives = 103/185 (55%), Gaps = 14/185 (7%) Query: 306 RRGKLDLQLEQQARTDKLTSLLNRRALDEALQEAWHKSQRNSTTRFAVLFADVDFFKLYN 365 +R + +LQ+E QA D LT L NRR L L A S R + +LF D+DFFK N Sbjct: 431 KRKQTELQIEYQAMHDMLTDLPNRRFLVNTLNTAMETS-RLRQSSLTMLFCDLDFFKSVN 489 Query: 366 DTYGHKAGDYALVAVARCIQGAVARQCDKTGRFGGEEFVALLDEADAQGALHVASNILTS 425 DT+GH GD L+ +++ I A+ D RFGG EFV L + + A+ + A+ I+ + Sbjct: 490 DTHGHDFGDQCLIEISKRIVTALP-TADFVARFGGNEFVILTNSSLAEATIK-ANTIMAA 547 Query: 426 LQALKIPHERSPFG----RLSLSIGVACLDRDLHQSMEEVVKAADEALYQAKRAGRNRVQ 481 + ER F ++ SIG+A L+ HQS ++++ AD A+YQAK GRNR + Sbjct: 548 VS------ERLIFDNVVVKIQTSIGIAQLNAG-HQSPADLIRDADAAMYQAKERGRNRTE 600 Query: 482 LYRPA 486 +Y A Sbjct: 601 IYDAA 605 >gi|152982708|ref|YP_001353141.1| hypothetical protein mma_1451 [Janthinobacterium sp. Marseille] Length = 528 Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/200 (36%), Positives = 106/200 (53%), Gaps = 10/200 (5%) Query: 286 TAAFSTASIYLISR--LREEFFRRGKLDLQLEQQA---RTDKLTSLLNRRALDEALQEAW 340 T A + I L +R + + R L+LQLEQ + R D+LT LNRR LD+ L+ Sbjct: 330 TEALRSRDIVLAARKDVEDAEARIHNLELQLEQMSELVREDQLTGSLNRRGLDDVLEREI 389 Query: 341 HKSQRNSTTRFAVLFADVDFFKLYNDTYGHKAGDYALVAVARCIQGAVARQCDKTGRFGG 400 ++ R ++ + D+D FK ND YGH AGD AL+ + R I+ + R D RFGG Sbjct: 390 ARADRRASP-LCIAMLDLDDFKKINDKYGHMAGDEALIHLVRVIKDTL-RTMDVIARFGG 447 Query: 401 EEFVALLDEADAQGALHVASNILTSLQALKIPHERSPFGRLSLSIGVACLDRDLHQSMEE 460 EEF+ +L + + A+ + + L H + ++ S GVA R + Sbjct: 448 EEFLIVLPDTPLEEAILTITRLQRELTKQIFMHNHTRL-LMTFSAGVAL--RKEREDQAA 504 Query: 461 VVKAADEALYQAKRAGRNRV 480 +VK AD ALY+AK+AG+NRV Sbjct: 505 MVKRADIALYEAKKAGKNRV 524 >gi|152982100|ref|YP_001354823.1| hypothetical protein mma_3133 [Janthinobacterium sp. Marseille] Length = 352 Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 67/172 (38%), Positives = 95/172 (55%), Gaps = 6/172 (3%) Query: 313 QLEQQARTDKLTSLLNRRALDEALQEAWHKSQRNSTTRFAVLFADVDFFKLYNDTYGHKA 372 +L+ TD LT + NRR ++ L E ++QR+ + ++ D+D FK ND +GH+ Sbjct: 179 RLQHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGYA-LSGMYIDLDHFKKVNDNFGHQG 237 Query: 373 GDYALVAVARCIQGAVARQCDKTGRFGGEEFVALLDEADAQGALHVASNILTSLQALKIP 432 GD L VA I+ + R D GRFGGEEFV LL +A AL VA I S+ I Sbjct: 238 GDEVLCEVANRIKAEL-RLSDALGRFGGEEFVVLLIDAPLDAALVVAERIRASVSERPIV 296 Query: 433 HERSPFGRLSLSIGVACLD----RDLHQSMEEVVKAADEALYQAKRAGRNRV 480 R ++SIGVA L+ +D ++++ AD ALYQAK+ GRN+V Sbjct: 297 LSSGEELRATVSIGVASLNTADRQDSAAVAQQLLAKADLALYQAKKEGRNKV 348 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,058,139 Number of extensions: 42741 Number of successful extensions: 189 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 130 Number of HSP's successfully gapped: 29 Length of query: 501 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 414 Effective length of database: 899,382 Effective search space: 372344148 Effective search space used: 372344148 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)