BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4379.p (594 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979865|ref|YP_001352342.1| dihydroxy-acid dehydratase [Jan... 230 1e-61 gi|152980587|ref|YP_001354001.1| phosphogluconate dehydratase [J... 131 1e-31 >gi|152979865|ref|YP_001352342.1| dihydroxy-acid dehydratase [Janthinobacterium sp. Marseille] Length = 557 Score = 230 bits (587), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 170/532 (31%), Positives = 274/532 (51%), Gaps = 28/532 (5%) Query: 32 RFMNYGITAEELRSGRPIIGIAQSGSDISPCNRIHLELAKRVRDGIRDAGGIPMEFPLHP 91 R M Y + E+ +P++G+A S I+PCN +LA I+D+GG P F Sbjct: 20 RSMYYAMGYEKEDFDKPMVGVANGHSTITPCNSGLQKLADIAIKTIKDSGGNPQVFGTPT 79 Query: 92 IFENCRRPT-----AAIDRNLAYLGLVEILHGYPIDAVVLTTGCDKTTPSQIMAAATVDI 146 I + T + I R + + ++G +D V++ GCDK P ++A ++ Sbjct: 80 ISDGMSMGTEGMKYSLISREVIADCIETAVNGQWMDGVLVIGGCDKNMPGGMIAMLRTNV 139 Query: 147 PAIVLSGGPMLDGWMDGELVGSGSAIWKGRKLLSAGSIDNEKFLEIAAASAPSSGHCNTM 206 P+I + GG + G G+ + SA ++ +AG + E F I + PS+G C M Sbjct: 140 PSIYVYGGTIKPGNWKGKDLTIVSA-FEAVGEFTAGRMSQEDFDGIERNACPSAGSCGGM 198 Query: 207 GTASTMNAMAEALGMSLTGCSAIPAPYRERGQMAYETGRRIVGMAYEDLRPSAILTREAF 266 TA+TM++ EALG++L S + P E+ A E+ R ++ DL+P I+TR+A Sbjct: 199 YTANTMSSSFEALGLALPYSSTMANPDDEKVGSAAESARVLIEAIKNDLKPRDIVTRKAI 258 Query: 267 LDAIVVNAAIGGSTNAQPHIMAMARHAGVELHSEDWMKYGYDVPLLLNMQPAGKYLGERF 326 +A+ V A GGSTNA H +A+A A VE +D+ + VP++ +++P+GKY+ Sbjct: 259 ENAVAVIMATGGSTNAVLHFLAIAHAAEVEWTIDDFERMRKKVPVICDLKPSGKYVATDL 318 Query: 327 HRAGGVPAIMWELQQAGKLRAERITASGKTMAENLQGRQS---NDREMIYPFAAPLRERA 383 H+AGG+P +M L AG L + +T +G+T+AE L S D+ +I+P L E+ Sbjct: 319 HKAGGIPQVMKVLLDAGLLHGDCMTITGQTVAEALAHIPSVPRADQHVIHPIKDALYEQG 378 Query: 384 GFLVLKGNLF-DFAIMKTSVISEAFRERYLSTPGQENIFECRAVVFDGSDDYHARINDPA 442 +LKGNL + + K + + ++ P A VFD D+Y A A Sbjct: 379 HLAILKGNLSPEGCVAKIT----GLKNPVITGP---------ARVFD--DEYSAMDAIMA 423 Query: 443 LKIDENTLLAIRGAGPVGWPGSAEVVNMQPPDALIKRGV-STLPTLGDGRQSGTSDSPSI 501 KI +L +R GP G PG E+ + P AL+ +G+ ++ + DGR SG + + Sbjct: 424 NKIVAGDVLVMRYLGPKGGPGMPEM--LAPTSALVGQGLGESVGLITDGRFSGGTWGMVV 481 Query: 502 LNASPESAVGGGLAYLRDGDRVRIDLNTGECNMLISEEELARRKSEGIPPVP 553 + SPE+ VGG + + +GD V ID + + + EEE+ARR++ P P Sbjct: 482 GHVSPEAFVGGLIGLVEEGDSVTIDAHKLLIQLNVPEEEIARRRANWKQPAP 533 >gi|152980587|ref|YP_001354001.1| phosphogluconate dehydratase [Janthinobacterium sp. Marseille] Length = 642 Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 144/562 (25%), Positives = 230/562 (40%), Gaps = 62/562 (11%) Query: 48 PIIGIAQSGSDISPCNRIHLELAKRVRDGIRDAGGIPMEFPLHPIFENCRRPT------- 100 P I I + +D+ ++ ++D +R AGG+ P C T Sbjct: 68 PSIAIVSAYNDMLSAHQPFERFPHIIKDAVRKAGGVAQFAGGVPAM--CDGITQGQPGME 125 Query: 101 -AAIDRNLAYLGLVEILHGYPIDAVVLTTGCDKTTPSQIMAAATV-DIPAIVLSGGPMLD 158 + R+ + L DA + CDK P ++ A +PA+ + GPM Sbjct: 126 LSLFSRDTIAMSTAIALSHNMFDAALYLGVCDKIVPGLVIGALHFGHLPAVFVPAGPMTS 185 Query: 159 GWMDGELVGSGSAIWKGRKLLSAGSIDNEKFLEIAAASAPSSGHCNTMGTASTMNAMAEA 218 G + E K R+L + G I + LE S +G C GTA++ + E Sbjct: 186 GMSNPEKA-------KIRQLYAQGKIGRDALLEAEGQSYHDAGTCTFYGTANSNQMLMEV 238 Query: 219 LGMSLTGCSAIPAPYRERGQMAYETGRRIVGMAYE--DLRPSAILTRE-AFLDAIVVNAA 275 +G+ L G + I R + +R V ++ + P L E ++A+V A Sbjct: 239 MGLHLPGAAFITPNTPLRDALTAHAAQRAVEISAQGKSFTPIGRLVDEKTIVNAVVALLA 298 Query: 276 IGGSTNAQPHIMAMARHAGVELHSEDWMKYGYDVPLLLNMQPAGKYLGERFHRAGGVPAI 335 GGSTN H++AMA+ AG+ + D+ PL+ + P G FH AGG + Sbjct: 299 TGGSTNHTLHLVAMAKAAGIVIDWNDFDALSAIAPLVARIYPNGDADVNHFHAAGGTGFV 358 Query: 336 MWELQQAGKLRAERITASGKTMAEN-----LQGRQ---------SNDREMIYPFAAPLRE 381 + EL AG L + +T G+ + + LQG Q S + +++ A P Sbjct: 359 IRELLDAGLLHDDVLTILGRGLRAHAAEPFLQGEQVVWQPAASVSGNTDVLRTAADPFSG 418 Query: 382 RAGFLVLKGNLFDFAIMKTSVISEAFRERYLSTPGQENIFECRAVVFDGSDDY-HARIND 440 G +L GNL + ++V Q I A+VFD + + HA Sbjct: 419 DGGMKLLSGNLGRAVVKVSAVKV------------QHRIVRAPAIVFDSQEAFMHAY--- 463 Query: 441 PALKIDENTLLAIRGAGPVGWPGSAEVVNMQPPDALIKRGVSTLPTLGDGRQSGTSDS-P 499 A +++ + + +R GP G E+ + P ++ + + DGR SG S P Sbjct: 464 QAGELNRDFIAVLRHQGPRA-NGMPELHALTPALGSLQDAGRHVALVTDGRMSGASGKVP 522 Query: 500 SILNASPESAVGGGLAYLRDGDRVRIDLNTGECNMLISEEELARRKSEGIPPVPPSQT-- 557 + ++ SPE GG L +RDGD + ++ TG L+ E E A R G+ P SQ Sbjct: 523 AAIHVSPEVLAGGPLGRVRDGDIIELNAETGVLQALVPEAEWAAR---GVEPADLSQNEI 579 Query: 558 ----PWQEIYRSTVGQLETGAC 575 ++R V E GA Sbjct: 580 GMGRELFAMFRHVVSAAEEGAT 601 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.135 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,457,165 Number of extensions: 64459 Number of successful extensions: 201 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 193 Number of HSP's successfully gapped: 2 Length of query: 594 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 505 Effective length of database: 891,988 Effective search space: 450453940 Effective search space used: 450453940 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)