BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4378.p (263 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981525|ref|YP_001354195.1| dehydrogenase/reductase family ... 104 7e-24 gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase... 100 8e-23 gi|152980003|ref|YP_001353169.1| short chain dehydrogenase [Jant... 96 2e-21 gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Jant... 96 3e-21 gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 92 4e-20 >gi|152981525|ref|YP_001354195.1| dehydrogenase/reductase family protein [Janthinobacterium sp. Marseille] Length = 248 Score = 104 bits (259), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 72/251 (28%), Positives = 116/251 (46%), Gaps = 11/251 (4%) Query: 13 LYRSLAGKRVVITGGGSGIGAALVEAFVAQGAQVYFLDIATAPSEALVEALKAAPVAPRF 72 + SL K ++ITG G IG A + VA GA + D+ + L +A Sbjct: 1 MTHSLRNKTIIITGAGGNIGHAYCDGLVAAGANIVMADL-----QDLSAQAQAYGQQAIA 55 Query: 73 FPCNLMNLEALRATFTEIETIAGGVDILINNAA---NDDRHKTADVTPAYWDERLAVNLR 129 ++ + ++ + G +D +INNA D+ WD +N+R Sbjct: 56 MKIDVSDPASIEMMAKQTHAHFGRIDGIINNAGFFKGCSFGSFMDIPIDEWDRCYEINVR 115 Query: 130 HQFFCAQAVLPGMRERKSGVILNFGSISWHLGLPDLTLYMTAKAGIEGMTHGMARDFGRD 189 + C +AV P MRE+ SG I+N S + + G+P+ Y+++KA I G+T +AR+ G Sbjct: 116 GVWLCCRAVFPYMREQGSGKIINVSSNTPYKGVPNFLHYVSSKAAIIGLTRSLAREVGAH 175 Query: 190 GVRVNAIIPGAIRTPRQTLLWHTPE-EEAKILAAQCLPVRVDPHDVAALALFLSSDSGAK 248 ++ N + P I P +L + + +A +CL PHD+ ALFL SD Sbjct: 176 NIQANTLCPDLI--PDADILAKQGSVADERTIAGRCLQRSQTPHDMVGAALFLLSDGSDF 233 Query: 249 CTGREYYVDAG 259 TG+ V+ G Sbjct: 234 ITGQSLLVNGG 244 >gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase [Janthinobacterium sp. Marseille] Length = 264 Score = 100 bits (250), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 79/264 (29%), Positives = 119/264 (45%), Gaps = 28/264 (10%) Query: 17 LAGKRVVITGGGSGIGAALVEAFVAQGAQVYFLDIATAPSEALVEALKAAPVAPRFFPCN 76 L GK ++TG SGIG + +A QGA + A ++ L+AA + R + Sbjct: 6 LHGKTALVTGSTSGIGLGIAQALAQQGADIVLNGFGDANE---IKTLQAALM--RNYGVK 60 Query: 77 LMNLEALRATFTEIETIA-------GGVDILINNAANDDRHKTADVTPAYWDERLAVNLR 129 ++ A + EIE + G VDIL+NNA D WD +A+NL Sbjct: 61 CVHHPADMSKPAEIEAMMAFAAQQFGRVDILVNNAGIQHTETIEDFPVEKWDAIIAINLS 120 Query: 130 HQFFCAQAVLPGMRERKSGVILNFGSISWHLGLPDLTLYMTAKAGIEGMTHGMARDFGRD 189 F + LP M+ + G I+N S+ +G + Y+ AK GI G+T A + Sbjct: 121 SAFHTTRLALPMMQAKNWGRIINIASVHGLVGSVQKSAYVAAKHGIVGLTKVTALEMAHT 180 Query: 190 GVRVNAIIPGAIRTP-----------RQTLLWHTPEEEAKILAAQCLPVR--VDPHDVAA 236 G+ NAI PG + TP R+ L + E K L ++ P V P + A Sbjct: 181 GITCNAICPGWVLTPLVQKQVDARAAREGL---SDEAAKKDLVSEKQPSGEFVTPQQLGA 237 Query: 237 LALFLSSDSGAKCTGREYYVDAGW 260 LA+FL S++ + G + +D GW Sbjct: 238 LAVFLCSEAAVQVRGAAWNMDGGW 261 >gi|152980003|ref|YP_001353169.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 272 Score = 96.3 bits (238), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 100/211 (47%), Gaps = 7/211 (3%) Query: 16 SLAGKRVVITGGGSGIGAALVEAFVAQGAQVYFLDIATAPSEALVEALKAAPVAPRFFPC 75 + GK ++TG SG+GA + GAQV + L ++A A + Sbjct: 20 NFEGKVALVTGASSGLGARFAKVLAMAGAQVILASRRVDRLKELRAEIEAEGGAAQVVSL 79 Query: 76 NLMNLEALRATFTEIETIAGGVDILINNAANDDRHKTADVTPAYWDERLAVNLRHQFFCA 135 ++ + ++++ ET G +DIL+NN+ + DVTP + + N R FF A Sbjct: 80 DVTDYASIKSAIAHAETETGAIDILVNNSGVSASQRLVDVTPEDYAHMMDTNQRGAFFVA 139 Query: 136 QAVLPGMRERKSG------VILNFGSISWHLGLPDLTLYMTAKAGIEGMTHGMARDFGRD 189 Q V M R G I+N GS++ +P+L LY +KA + MT MA ++G+ Sbjct: 140 QEVAKRMIARHKGDPKKQHRIINIGSVAGLRVVPELGLYCMSKAAVVHMTKAMAVEWGKF 199 Query: 190 GVRVNAIIPGAIRTPRQTLLWHTPEEEAKIL 220 G+ NAI PG I T L + E+ ++L Sbjct: 200 GINTNAICPGYIGT-EMNLDYFQSEQGQQVL 229 >gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Janthinobacterium sp. Marseille] Length = 246 Score = 95.9 bits (237), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 111/240 (46%), Gaps = 6/240 (2%) Query: 23 VITGGGSGIGAALVEAFVAQGAQVYF-LDIATAPSEALVEALKAAPVAPRFFPCNLMNLE 81 ++TGG G+G A+ A G QV ++ ++ +K + +PC++ + + Sbjct: 6 LVTGGMGGLGEAICIKLAALGYQVVTTYSPGNKKADEWLKLMKESGYDFHAYPCDVSDYD 65 Query: 82 ALRATFTEIETIAGGVDILINNAANDDRHKTADVTPAYWDERLAVNLRHQFFCAQAVLPG 141 + + +IE G VD+L+NNA + WD +A NL F + V G Sbjct: 66 SAQQCVAQIEKEMGPVDVLVNNAGITRDITFKKMGKPDWDAVMATNLDSVFNMTKPVCDG 125 Query: 142 MRERKSGVILNFGSISWHLGLPDLTLYMTAKAGIEGMTHGMARDFGRDGVRVNAIIPGAI 201 M ER G I+N S++ G T Y AKAG+ G T +A + R V VN I PG I Sbjct: 126 MVERGWGRIINISSVNGQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVNTISPGYI 185 Query: 202 RTPRQTLLWHTPEE--EAKILAAQCLPVRVDPHDVAALALFLSSDSGAKCTGREYYVDAG 259 T ++ P++ + KI+ + P ++A L +L+SD A TG ++ G Sbjct: 186 GT---KMVMAIPQDVLDTKIVPQIPMGRLGKPEEIAGLVAYLASDEAAFLTGANIAINGG 242 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 91.7 bits (226), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 112/246 (45%), Gaps = 9/246 (3%) Query: 17 LAGKRVVITGGGSGIGAALVEAFVAQGAQVYFLDIATAPSEALVEALKA-APVAPRFFPC 75 L+G+ ++TG GIG A+ + GA+V I TA SE+ A+ + Sbjct: 6 LSGQVALVTGASRGIGRAIAQELAKLGAKV----IGTATSESGAAAISEYLGNGGKGVVL 61 Query: 76 NLMNLEALRATFTEIETIAGGVDILINNAANDDRHKTADVTPAYWDERLAVNLRHQFFCA 135 ++ + A EI+ G V IL+NNA + WD +A NL + Sbjct: 62 DVNDAARSVALIDEIQKEFGAVSILVNNAGITQDQLAMRMKDEEWDSVIATNLTAVGRLS 121 Query: 136 QAVLPGMRERKSGVILNFGSISWHLGLPDLTLYMTAKAGIEGMTHGMARDFGRDGVRVNA 195 +AVL GM + K+G I+N S+ G Y AKAG+ GM+ +AR+ G + VN Sbjct: 122 RAVLRGMMKAKTGRIINITSVVGSSGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVNC 181 Query: 196 IIPGAIRTPRQTLLWHTPEEEAKILAAQCLPVRVD-PHDVAALALFLSSDSGAKCTGREY 254 I PG I T L E++ L Q R+ P D+AA FL+S + TG Sbjct: 182 IAPGFIDTDMTKTL---SEQQIAALLQQVPLGRLGVPEDIAAAVSFLASPQASYITGTTL 238 Query: 255 YVDAGW 260 +V+ G Sbjct: 239 HVNGGM 244 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.136 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 645,169 Number of extensions: 26710 Number of successful extensions: 147 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 120 Number of HSP's successfully gapped: 20 Length of query: 263 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 182 Effective length of database: 921,564 Effective search space: 167724648 Effective search space used: 167724648 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)