BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4376.p (518 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981231|ref|YP_001353367.1| ABC-type transport systems, ATP... 263 3e-71 gi|152981256|ref|YP_001355254.1| ABC-type uncharacterized transp... 229 3e-61 gi|152981020|ref|YP_001352897.1| ABC-type uncharacterized transp... 122 7e-29 gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino a... 114 2e-26 gi|152981012|ref|YP_001355041.1| ABC-type transport system, ATPa... 98 1e-21 >gi|152981231|ref|YP_001353367.1| ABC-type transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 511 Score = 263 bits (671), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 179/492 (36%), Positives = 267/492 (54%), Gaps = 33/492 (6%) Query: 6 LEMKGIVKSFGGVRALDGIDIKIRPGECVGLCGENGAGKSTLMKILSG-VYPHGTWEGEI 64 LE+ I K + V A DGI++ ++PGE + GENGAGKSTLMKI+ G V P G++ Sbjct: 5 LELHSITKRYPSVVANDGINLSVKPGEIHAVLGENGAGKSTLMKIIYGSVKPDA---GKV 61 Query: 65 LWDGKPLQAHSVRDTEAAGIVIIHQELMLVPELSVAENIFMG--HEITLPGGRMNYPAMY 122 LW+GK + + GI ++ Q L L+V ENI +G H+ L + Sbjct: 62 LWNGKEVHIANPAMARELGIAMVFQHFSLFDTLTVVENIALGLPHDTKLD-------ELA 114 Query: 123 RRAEELMRELNMPDINVALPVSQYGGGHQQLVEIAKALNKDARLLILDEPSSSLTASEIA 182 RR + + + ++ V G Q VEI +AL +LLILDEP+S LT + Sbjct: 115 RRISDTAEQYGL-ELEPQRHVHTLSVGECQRVEIVRALLAKPQLLILDEPTSVLTPQAVE 173 Query: 183 VLLKIIKDLKARGVACVYISHKLDEVAEICDTISVIRDGKHIATTPMQEMDVDKIITQMV 242 L + ++ L A G + +YISHKLDE+ +CDT +V+R GK+ +E + M+ Sbjct: 174 KLFETLRKLAAEGCSILYISHKLDEIRALCDTCTVVRAGKNTGICDPREESAASLSRMMI 233 Query: 243 GREITAMYPERNHAI---GEVVLEARHITCYDIDNPRRKRVDDVSFSVRRGEILGIAGLV 299 G E P H + G+ +L ++++ ++P + D++F +R GEILGIAG+ Sbjct: 234 GCE----PPPIKHVLRSPGQTLLAVKNLSLKK-NHPFATELSDINFELRAGEILGIAGVS 288 Query: 300 GAGRTELVSAIFGAYRGRYEGQ-ILLEGQPADTGSPLKSIRQGLCMVPEDRKHHGIVPDL 358 G G+ EL++A+ G R E Q ILL+G+ +P + +GL VPE+R G VPD+ Sbjct: 289 GNGQQELLAALSGE-DPRAEAQMILLQGERVGHFNPAQRRERGLGFVPEERLGRGAVPDM 347 Query: 359 DVGQNITLTVLNRFSRGSRIDSS-----AELKTIQGEINRLRVKTASPFLPITGLSGGNQ 413 + NI L+ G+ I S A +K I R VK P LSGGN Sbjct: 348 SLADNILLS----HQTGATISSGFIRKHAIVKMATDVIERFVVKAGGPHAAARSLSGGNL 403 Query: 414 QKAVLSKMLLAQPKVLILDEPTRGVDVGAKAEIYRLISDLAKAGLAIIMVSSELAEVLGV 473 QK ++ + ++ PKVLI+ +PT GVDVGA A+I + L AG A++++S EL E+ + Sbjct: 404 QKYIVGREVMRNPKVLIVAQPTWGVDVGAAAQIRAELVALRDAGCALLVISEELDELFEI 463 Query: 474 SDRVLVIGEGRL 485 SDR++VI +GRL Sbjct: 464 SDRLMVIAKGRL 475 Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 107/212 (50%), Gaps = 21/212 (9%) Query: 281 DDVSFSVRRGEILGIAGLVGAGRTELVSAIFGAYRGRYEGQILLEGQPADTGSPLKSIRQ 340 D ++ SV+ GEI + G GAG++ L+ I+G+ + G++L G+ +P + Sbjct: 21 DGINLSVKPGEIHAVLGENGAGKSTLMKIIYGSVKPD-AGKVLWNGKEVHIANPAMAREL 79 Query: 341 GLCMVPEDRKHHGIVPDLDVGQNITL-----TVLNRFSRGSRIDSSAELKTIQGEINRLR 395 G+ MV +H + L V +NI L T L+ +R RI +AE ++ E R Sbjct: 80 GIAMV---FQHFSLFDTLTVVENIALGLPHDTKLDELAR--RISDTAEQYGLELEPQR-H 133 Query: 396 VKTASPFLPITGLSGGNQQKAVLSKMLLAQPKVLILDEPTRGVDVGAKAEIYRLISDLAK 455 V T LS G Q+ + + LLA+P++LILDEPT + A +++ + LA Sbjct: 134 VHT---------LSVGECQRVEIVRALLAKPQLLILDEPTSVLTPQAVEKLFETLRKLAA 184 Query: 456 AGLAIIMVSSELAEVLGVSDRVLVIGEGRLRG 487 G +I+ +S +L E+ + D V+ G+ G Sbjct: 185 EGCSILYISHKLDEIRALCDTCTVVRAGKNTG 216 >gi|152981256|ref|YP_001355254.1| ABC-type uncharacterized transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 523 Score = 229 bits (585), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 168/523 (32%), Positives = 266/523 (50%), Gaps = 39/523 (7%) Query: 5 LLEMKGIVKSFGGVRALDGIDIKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTWEGEI 64 +LE+ G+ K FG L+ I + + GE L GENGAGKSTL ++ GV H G I Sbjct: 3 ILEIAGVTKRFGSHLVLNDISLNVEAGEVHCLLGENGAGKSTLCNLIFGV--HRPDAGLI 60 Query: 65 LWDGKPLQAHSVRDTEAAGIVIIHQELMLVPELSVAENIFMGHEITLPGGRMNYPAMYRR 124 +DG + GI ++HQ LV +SV EN+ +G + + + RR Sbjct: 61 KYDGGEFRPSGPAHALELGIAMVHQHFSLVSNMSVVENLMLGRAQAI----LKQDFIIRR 116 Query: 125 AEELMRELNMPDINVALPVSQYGGGHQQLVEIAKALNKDARLLILDEPSSSLTASEIAVL 184 +EL E ++ I+ V G +Q +EI K L + RLL+LDEP++ L E+ L Sbjct: 117 MQELADEYDLK-IDPHCIVGDLSVGERQRIEIIKCLLSNPRLLLLDEPTAVLPPEEVDSL 175 Query: 185 LKIIKDLKARGVACVYISHKLDEVAEICDTISVIRDGKHIATTPMQEMDVDKIITQMVGR 244 L + + + G + ++HKL E+A++ D SV+R G+ + + M+ D+ ++ MVGR Sbjct: 176 LAVCRKVAESGRGVILVTHKLAEIAKVADRTSVLRQGRIVESVCMEGADMHALVRSMVGR 235 Query: 245 EITA--------------------------MYPERNHAIGEVVLEARHITCYDIDNPRRK 278 ++ + + ++G L+ + ++ D D Sbjct: 236 DVKSGDSVLAATLGILSDAAQDAANATPAAAAVVDSRSLGLPALQLQGLSFQDKDGV--T 293 Query: 279 RVDDVSFSVRRGEILGIAGLVGAGRTELVSAIFGAYRGRYEGQILLEGQPADTGSPLKSI 338 R+ DV SV RGEI+GIAG+ G G++EL + I G G + G+ TGS + I Sbjct: 294 RLSDVHLSVARGEIVGIAGVEGNGQSELGAIIAGLLT--PTGGAMKIGEQDLTGSSAQDI 351 Query: 339 RQ-GLCMVPEDRKHHGIVPDLDVGQNITLTVLNRFSRGSRIDSSAELKTIQGEINRLRVK 397 G ++PEDR + +L V +N+ L L +FSR +D K + V+ Sbjct: 352 TDAGAGIIPEDRHAVACISELSVAENLFLGSLEKFSRFGLLDREKMAKQAATMMTEFDVR 411 Query: 398 TASPFLPITGLSGGNQQKAVLSKMLLAQPKVLIL-DEPTRGVDVGAKAEIYRLISDLAKA 456 SP P++ LSGGNQQKAVL++ L P + +L +PTRG+DVGA ++ I A Sbjct: 412 ATSPNAPMSSLSGGNQQKAVLARELSLDPLIFLLAAQPTRGLDVGAVEAVFNRIRTAASN 471 Query: 457 GLAIIMVSSELAEVLGVSDRVLVIGEGRLRGDFVNDNLSQETV 499 GL ++++SS+L E++ VSDRV V+ G + G+ D ++E + Sbjct: 472 GLGVLLISSDLNELIAVSDRVAVLYRGAIVGELPADPANREKI 514 Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/238 (25%), Positives = 117/238 (49%), Gaps = 10/238 (4%) Query: 280 VDDVSFSVRRGEILGIAGLVGAGRTELVSAIFGAYRGRYEGQILLEGQPADTGSPLKSIR 339 ++D+S +V GE+ + G GAG++ L + IFG +R G I +G P ++ Sbjct: 19 LNDISLNVEAGEVHCLLGENGAGKSTLCNLIFGVHRPDA-GLIKYDGGEFRPSGPAHALE 77 Query: 340 QGLCMVPEDRKHHGIVPDLDVGQNITLTVLNRFSRGSRIDSSAELKTIQGEINRLRVKTA 399 G+ MV +H +V ++ V +N+ L + I ++ +Q + +K Sbjct: 78 LGIAMV---HQHFSLVSNMSVVENLMLGRAQAILKQDFI-----IRRMQELADEYDLKI- 128 Query: 400 SPFLPITGLSGGNQQKAVLSKMLLAQPKVLILDEPTRGVDVGAKAEIYRLISDLAKAGLA 459 P + LS G +Q+ + K LL+ P++L+LDEPT + + + +A++G Sbjct: 129 DPHCIVGDLSVGERQRIEIIKCLLSNPRLLLLDEPTAVLPPEEVDSLLAVCRKVAESGRG 188 Query: 460 IIMVSSELAEVLGVSDRVLVIGEGRLRGDFVNDNLSQETVLAAAINQPVPQANSRAAA 517 +I+V+ +LAE+ V+DR V+ +GR+ + ++ + + + V +S AA Sbjct: 189 VILVTHKLAEIAKVADRTSVLRQGRIVESVCMEGADMHALVRSMVGRDVKSGDSVLAA 246 >gi|152981020|ref|YP_001352897.1| ABC-type uncharacterized transport system, duplicated ATPase component [Janthinobacterium sp. Marseille] Length = 533 Score = 122 bits (305), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 139/533 (26%), Positives = 255/533 (47%), Gaps = 65/533 (12%) Query: 5 LLEMKGIVKSFGGVRALDGIDIKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTWEGEI 64 LL+++ + SF + ++ + I GE L GE+G+GK+ L + T+ G+I Sbjct: 3 LLDIQNLQVSFDTSKVVNDVSFSIAAGEKFALVGESGSGKTVTALSLLRLNQDATYGGKI 62 Query: 65 LWDGKPLQAHSVRDTEAA-------GIVIIHQELM--LVPELSVAENI---FMGHEITLP 112 L++G+ + ++ TEAA + +I QE M L P ++ I M HE Sbjct: 63 LFEGQDI----LQKTEAAMRSVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMLHE---- 114 Query: 113 GGRMNYPAMYRRAEELMRELNMPDIN---VALPVSQYGGGHQQLVEIAKALNKDARLLIL 169 ++ A R EL+ + +P+ ++ P + GG +Q IA AL +LLI Sbjct: 115 --GISARAAALRTVELLDKTGIPEPQRRALSYP-HELSGGQRQRAMIAMALACKPKLLIA 171 Query: 170 DEPSSSLTASEIAVLLKIIKDL-KARGVACVYISHKLDEVAEICDTISVIRDGKHIATTP 228 DEP+++L + +++++ L + +A + I+H L+ V D + V+ G+ + Sbjct: 172 DEPTTALDVTIQVQIVELLNQLQREENMAVLMITHDLNLVRHFADRVGVMEKGRLLEVAT 231 Query: 229 MQEMDVDKIITQMVGREITAMYPERNHAIGEVV-------LEARHITC-YDIDNPRRKRV 280 Q++ + +++ A P H + VV L+A ++C +DI K++ Sbjct: 232 TQQLFSAP--REAYTKKLLASQP---HQLVNVVSEAATPLLKAEQVSCTFDIKKGWFKKI 286 Query: 281 -----DDVSFSVRRGEILGIAGLVGAGRTELVSAIFGAYRGRYEGQILLEGQPADTGS-- 333 D V V+ GE LGI G G+G++ L A+ +G+I +GQ S Sbjct: 287 PFVAVDQVDVQVKPGETLGIVGESGSGKSTLGLALLRLSGAHVKGEIAFDGQAITHQSRD 346 Query: 334 PLKSIRQGLCMVPEDRKHHGIVP----DLDVGQNITLTVLNRFSRGSRIDSSAELKTIQG 389 L+ +R + +V +D + P + VG+ + L G R + L+ + G Sbjct: 347 ALRPLRARMQIVFQD-PFASLSPRRTVEQIVGEGLALHQPQLGPHGIRKAVADGLQEV-G 404 Query: 390 EINRLRVKTASPFLPITGLSGGNQQKAVLSKMLLAQPKVLILDEPTRGVDVGAKAEIYRL 449 + + F SGG +Q+ +++ L+ +P +++LDEPT +DV + ++ L Sbjct: 405 LSAEMMTRYPHEF------SGGQRQRIAIARALVLKPDLILLDEPTSSLDVSVQHQVLLL 458 Query: 450 ISDLAKA-GLAIIMVSSELAEVLGVSDRVLVIGEGRLRGDFVNDNLSQETVLA 501 ++DL K G+A I +S +LA + ++ RV+V+ +GR+ V L+Q TVL+ Sbjct: 459 LADLQKKYGMAYIFISHDLAVIRAMAHRVMVMKDGRV----VEQGLTQ-TVLS 506 >gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 256 Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 121/237 (51%), Gaps = 15/237 (6%) Query: 1 MSEYL-LEMKGIVKSFGGVRALDGIDIKIRPGECVGLCGENGAGKSTLMKILSGVYPHGT 59 MSE + L + G+ K FGG++AL ++IKI G+ GL G NGAGK+T +++G+Y T Sbjct: 1 MSEQIILNIAGVSKRFGGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADT 60 Query: 60 WEGEILWDGKPLQAHSVRDTEAAGIVIIHQELMLVPELSVAENIFMGHEIT----LPGGR 115 G GKP + AGI Q + L E++ EN+ +G + L G Sbjct: 61 --GSFELAGKPYSPSAPHKVAKAGIARTFQNIRLFGEMTALENVMIGRHVRTHQGLFGAV 118 Query: 116 MNYPAMYR-------RAEELMRELNMPDINVALPVSQYGGGHQQLVEIAKALNKDARLLI 168 ++ A R RA EL+ + + G Q+ +EIA+AL D +LL Sbjct: 119 FHHKAARREEAEIRQRAMELLEFVGIAKF-AERTARHLSYGDQRRLEIARALATDPQLLA 177 Query: 169 LDEPSSSLTASEIAVLLKIIKDLKARGVACVYISHKLDEVAEICDTISVIRDGKHIA 225 LDEP++ + A+E L +++ +KA G + I H + + +CD I+V+ GK IA Sbjct: 178 LDEPAAGMNATEKLGLRELLVKIKAEGKTILLIEHDVKLMMGLCDRITVLDYGKPIA 234 Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/214 (23%), Positives = 100/214 (46%), Gaps = 13/214 (6%) Query: 280 VDDVSFSVRRGEILGIAGLVGAGRTELVSAIFGAYRGRYEGQILLEGQPADTGSPLKSIR 339 + DV+ + +G+I G+ G GAG+T + I G Y+ G L G+P +P K + Sbjct: 22 LSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQAD-TGSFELAGKPYSPSAPHKVAK 80 Query: 340 QGLCMVPEDRKHHGIVPDLDVGQNITLTVLNRFSRG-------SRIDSSAELKTIQGEIN 392 G+ ++ + G + L+ N+ + R +G + E + Q + Sbjct: 81 AGIARTFQNIRLFGEMTALE---NVMIGRHVRTHQGLFGAVFHHKAARREEAEIRQRAME 137 Query: 393 RLRVKTASPFLPITG--LSGGNQQKAVLSKMLLAQPKVLILDEPTRGVDVGAKAEIYRLI 450 L + F T LS G+Q++ +++ L P++L LDEP G++ K + L+ Sbjct: 138 LLEFVGIAKFAERTARHLSYGDQRRLEIARALATDPQLLALDEPAAGMNATEKLGLRELL 197 Query: 451 SDLAKAGLAIIMVSSELAEVLGVSDRVLVIGEGR 484 + G I+++ ++ ++G+ DR+ V+ G+ Sbjct: 198 VKIKAEGKTILLIEHDVKLMMGLCDRITVLDYGK 231 >gi|152981012|ref|YP_001355041.1| ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 246 Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 120/229 (52%), Gaps = 9/229 (3%) Query: 1 MSEYLLEMKGIVKSFGGVRALDGIDIKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTW 60 MS L+ + G+ KS+G + + + +++ GE +GL G NGAGK+T ++ G+ P Sbjct: 1 MSSKLI-VNGLQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDA- 58 Query: 61 EGEILWDGKPLQAHSVRDTEAAGIVIIHQELMLVPELSVAENIFMGHEITLPGGR-MNYP 119 G I DG + + G+ + QE + +LSV +NI E+ G+ +N Sbjct: 59 -GRIELDGVDISRLPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKALNSA 117 Query: 120 AMYRRAEELMRELNMPDI--NVALPVSQYGGGHQQLVEIAKALNKDARLLILDEPSSSLT 177 + +R + L+ +L + + N A+ +S GG ++ VEIA+AL + R ++LDEP + + Sbjct: 118 QLEQRLDTLLADLQIEKLRENQAMSLS---GGERRRVEIARALATNPRFVLLDEPFAGVD 174 Query: 178 ASEIAVLLKIIKDLKARGVACVYISHKLDEVAEICDTISVIRDGKHIAT 226 + + +I++ LK RG+ + H + E ICD +I G +A+ Sbjct: 175 PIAVIEIQRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGAVLAS 223 Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/212 (28%), Positives = 102/212 (48%), Gaps = 15/212 (7%) Query: 277 RKRVDDVSFSVRRGEILGIAGLVGAGRTELVSAIFGAYRGRYEGQILLEGQPADTGSPLK 336 R+ V DV+ V GE++G+ G GAG+T I G G+I L+G K Sbjct: 17 RQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSD-AGRIELDGVDISRLPIHK 75 Query: 337 SIRQGLCMVPEDRKHHGIVPDLDVGQNITLTVLNRFSRGSRIDSSA---ELKTIQG--EI 391 + GL +P++ + L V NI + + G ++S+ L T+ +I Sbjct: 76 RAQLGLSYLPQE---ASVFRKLSVEDNIRAVLELQRVNGKALNSAQLEQRLDTLLADLQI 132 Query: 392 NRLRVKTASPFLPITGLSGGNQQKAVLSKMLLAQPKVLILDEPTRGVDVGAKAEIYRLIS 451 +LR A LSGG +++ +++ L P+ ++LDEP GVD A EI R++ Sbjct: 133 EKLRENQA------MSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVIEIQRIVR 186 Query: 452 DLAKAGLAIIMVSSELAEVLGVSDRVLVIGEG 483 L + G+ +++ + E LG+ DR +I +G Sbjct: 187 FLKERGIGVLITDHNVRETLGICDRAYIINQG 218 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.137 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,201,838 Number of extensions: 53151 Number of successful extensions: 495 Number of sequences better than 1.0e-08: 54 Number of HSP's gapped: 383 Number of HSP's successfully gapped: 96 Length of query: 518 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 431 Effective length of database: 899,382 Effective search space: 387633642 Effective search space used: 387633642 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)