BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4374.p
         (418 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982990|ref|YP_001354510.1| AraC family transcriptional reg...    59   4e-10

>gi|152982990|ref|YP_001354510.1| AraC family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 332

 Score = 59.3 bits (142), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 59/112 (52%)

Query: 283 EVRNHPHVMQALHFIRQYACQGIKTDQVADYVGISRSSLEWYFRRELGRSVHDEILRFKL 342
           ++  HP + +  ++I  +    +   ++A  + +S  +    F RE G S  D I R + 
Sbjct: 221 QMNTHPTIRELQNWIMSHLEGELTVPRLAQRMAMSERNFARVFHREAGESPADFIERARF 280

Query: 343 DAAKRMLEQAGSHAAEIAVSCGFTTVQYLHAVFKRELGCTPREYQEQFAAGL 394
           +AA+RMLE        I    GF T + +  VFK+++G TP+ Y+E+F++ +
Sbjct: 281 EAARRMLEGDKLPLKLIVGKTGFGTEEKMRRVFKKKVGLTPKTYRERFSSTM 332


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 958,047
Number of extensions: 39882
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 332
Effective length of database: 903,079
Effective search space: 299822228
Effective search space used: 299822228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)