BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4368.p (526 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 289 2e-79 gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 269 2e-73 gi|152983038|ref|YP_001352600.1| methyl-accepting chemotaxis pro... 268 8e-73 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 265 5e-72 gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis pro... 264 9e-72 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 289 bits (740), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 194/517 (37%), Positives = 326/517 (63%), Gaps = 10/517 (1%) Query: 9 RPLPLALRIALTFGTLLLLCVLAGAIGLWQLHLVGSKLDAVVNDGNRNLALAQDLSQQVH 68 + L + R++L+FG++++L V+ + ++ + + V D LA + ++ Sbjct: 2 KNLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDLN 61 Query: 69 IGVESFQSVIIISDKAAAEAAMQRGGAAHERFITQRKALLEAVSDQQTRGLVETIFAIND 128 + ++ +++++KAA +A + + G A + L + V ++ R +TI + Sbjct: 62 QIARNMRNALLMTEKAAIQAELTQIGKATDSLNNALVELEKTVRSERGR---QTIAGLQA 118 Query: 129 QRAE--PAFGRFVQLSMTGQREEAGAWLATQLNPALSQLQAAIKALIDFQTARNQQLQQQ 186 R++ P F++L+ G ++EA A L ++ PA A+I LID+Q ++ + Sbjct: 119 DRSKFLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMKKSGAE 178 Query: 187 SQRDSTRGRWLMAACFLACILFAGGAGYGLMRTMRKSLGGEPHDALQVAREIADGNLMVR 246 + +++ + L+ + +L A A + ++ T +S+ A+ +AR++ADG+L Sbjct: 179 ANAKASQTQLLIGIFSIIAVLIA--AVFAVLAT--RSITRPLSQAVVLARKVADGDLTGS 234 Query: 247 VPVAGHDQAS-MMAAMREMRDKLIEVVGVVNHNAQAVAAASQEIAHGHHDLSERTEIQAS 305 + V D+ ++ A+++M + L+++V V +A+AS +IA G+ DLS RTE QAS Sbjct: 235 IVVESKDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQAS 294 Query: 306 SLQQTTASMGELSSKVRYTAEQSALACRLSEQAADATRSGREVVERVITQMQDIDTSSGK 365 SL++T +SM EL+S V+ AE + + +L+ A++ G VV +V+ M +I+ S+ K Sbjct: 295 SLEETASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKK 354 Query: 366 IVDIISVIEGLAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAASREIKQL 425 IVDII VI+G+AFQTNILALNAAVEAARAGEQGRGFAVVA+EVRTLAQRSA+A++EIK+L Sbjct: 355 IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKEL 414 Query: 426 ILASVDSSAAASKLSREAGAAMQQVVQSIDRVSAVMNDISSANQEQSTGIGEVNQALIQL 485 I SVD + S+L +AGA M++VV+S+ RV+ +M++I++A+QEQ+ GI ++NQA++Q+ Sbjct: 415 IGDSVDKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQM 474 Query: 486 DDLTQKNAALVEEATAASIFLKDKASELKRSVLTFQL 522 D +TQ+NAALVEEA AA+ L+ +AS L + V F+L Sbjct: 475 DQVTQQNAALVEEAAAAAESLQGQASHLSQVVGVFKL 511 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 269 bits (688), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 203/522 (38%), Positives = 297/522 (56%), Gaps = 24/522 (4%) Query: 11 LPLALRIALTFGTLLLLCVLAGAIGLWQLHLVGSKLDAVVNDGNRNLALAQDLSQQVHI- 69 L ++ R++ F LL L V+ +G+ +L VG+ D + LAQ+ V + Sbjct: 6 LKISTRLSFGFALLLTLMVMMTVVGILRLQEVGTSADVMTQTMLPKERLAQEWLSAVDVN 65 Query: 70 GVESFQSVIIIS--DKAAAEAAMQRGGAAHERFITQRKALLEAVSDQQTRGLVETIFAIN 127 G + S S D+A + M + + +++++ D+ R E + A N Sbjct: 66 GARTLASAKTTSAEDQAFFQKQMDKTSVRANELQKEIESMIKTPEDK--RLFEELVVARN 123 Query: 128 DQRA--EPAFGRFVQLSMTGQREEAGAWLATQLNPALSQLQAAIKALIDFQTARNQQLQQ 185 R + F +L G+ EA + ++ PA++ +I A++ + + Sbjct: 124 AYRDIRQTVF----KLKAEGKLPEAQLLINEKMLPAMNAYSNSIDAVLQNEKKLIDEAGT 179 Query: 186 QSQRDSTRGR----WLMAACFLACILFAGGAGYGLMRTMRKSLGGEPHDALQVAREIADG 241 Q GR L+AA + FA + R + + A+ VAR +A G Sbjct: 180 SIQSAFLSGRSLLIGLLAAAVALGVFFAWRLAISITRPLNR--------AVTVARTVASG 231 Query: 242 NLMVRVPVAGHDQAS-MMAAMREMRDKLIEVVGVVNHNAQAVAAASQEIAHGHHDLSERT 300 +L ++ V+ +D+ +M A+++M L + V V + +A AS++IA G+ DLS RT Sbjct: 232 DLSAKIEVSSNDETGQLMQALKDMTQSLNKTVSEVRSGTETIATASRQIASGNLDLSSRT 291 Query: 301 EIQASSLQQTTASMGELSSKVRYTAEQSALACRLSEQAADATRSGREVVERVITQMQDID 360 E QASSL +T ASMG+L+S VR A+ + A L+ A+D G VV V+ M I+ Sbjct: 292 EEQASSLGETAASMGQLTSTVRQNADNARQANSLAMSASDVAVKGGSVVSEVVDTMASIN 351 Query: 361 TSSGKIVDIISVIEGLAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAASR 420 S+ KIVDIISVI+G+AFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRSAAA++ Sbjct: 352 ESARKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAK 411 Query: 421 EIKQLILASVDSSAAASKLSREAGAAMQQVVQSIDRVSAVMNDISSANQEQSTGIGEVNQ 480 EIK LI SV A SKL EAG+ M ++V S+ RV+ +M +I +A+QEQS+GI +VNQ Sbjct: 412 EIKILIGDSVGKVEAGSKLVNEAGSTMNEIVDSVKRVTDIMAEIMAASQEQSSGIDQVNQ 471 Query: 481 ALIQLDDLTQKNAALVEEATAASIFLKDKASELKRSVLTFQL 522 A+ Q+D +TQ+NAALVEEA AA+ L+D+A L R V F+L Sbjct: 472 AIGQMDQVTQQNAALVEEAAAAAESLQDQAGNLARVVSQFKL 513 >gi|152983038|ref|YP_001352600.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 573 Score = 268 bits (684), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 192/514 (37%), Positives = 301/514 (58%), Gaps = 22/514 (4%) Query: 19 LTFGTLLLLCVLAG--AIGLWQLHLVGSKLDAVVNDGNRNLALAQDLSQQVHIGVESFQS 76 LT G L+L ++A A G+ + + +L+ +++D + L QD+S+ VHI S + Sbjct: 12 LTIGFFLVLALMAALTACGVNGMQNIQKRLNTIIDDNVHKMNLLQDMSESVHIVSHSMGT 71 Query: 77 VIIISDKAAAEAAMQRGGAAHERF-----ITQRKALLEA--VSDQQTRGLVETIFAINDQ 129 ++++ +++ +++ A ++ + ++K LE V ++ +G +NDQ Sbjct: 72 LVLMRNESEMVLEIKKVVDARSKYDAAILVLEKKPALEVERVLREKIKGAQADARVVNDQ 131 Query: 130 RAEPAFGRFVQLSMTGQREEAGAWLATQLNPALSQLQAAIKALIDFQTARNQQLQQQSQR 189 E A G + EEA A L P Q A+ I Q N+ + Sbjct: 132 IIEFARGN--------KDEEASALLIKTAEPLNQAWQQALDQSIQLQKHANEADAVAATA 183 Query: 190 DSTRGRWLMAACFLACILFAGGAGYGLMRTMRKSLGGEPHDALQVAREIADGNLMVRVPV 249 + M A ++ + + R++ + + A+ VA +A G+L + + Sbjct: 184 TYENSQLYMGALSGVALILGIVIAWVITRSISRPI----ISAMNVANTVALGDLTSHIEI 239 Query: 250 AGHDQAS-MMAAMREMRDKLIEVVGVVNHNAQAVAAASQEIAHGHHDLSERTEIQASSLQ 308 D++ ++ A+++M D L+ +V V H + +A AS EIA G+ DLS RTE QASSL+ Sbjct: 240 TTADESGQLLHALKDMNDNLVSIVTQVRHGTETIATASAEIATGNLDLSARTEEQASSLE 299 Query: 309 QTTASMGELSSKVRYTAEQSALACRLSEQAADATRSGREVVERVITQMQDIDTSSGKIVD 368 QT +SM EL+S V++ + + A +L+ A+DA G VV +V+ M I+ SS KI D Sbjct: 300 QTASSMEELTSTVKHNFDNARQANKLALNASDAASRGGVVVAQVVETMGFINGSSRKISD 359 Query: 369 IISVIEGLAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAASREIKQLILA 428 II VI+G+AFQTNILALNAAVEAARAGEQGRGFAVVATEVR LAQRS+AA+++I+ LI + Sbjct: 360 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSSAAAKDIRILIGS 419 Query: 429 SVDSSAAASKLSREAGAAMQQVVQSIDRVSAVMNDISSANQEQSTGIGEVNQALIQLDDL 488 SV A S L EAG M+++V S+ +V+++M +I++A++EQS GI +VNQA+ Q+D + Sbjct: 420 SVQKIDAGSLLVEEAGRTMKEIVISVQQVTSIMAEITAASEEQSAGIEQVNQAIAQMDQV 479 Query: 489 TQKNAALVEEATAASIFLKDKASELKRSVLTFQL 522 TQ+NAALVEEA AA+ L+++A L + V F+L Sbjct: 480 TQQNAALVEEAAAAAASLREQAENLSKVVRVFKL 513 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 265 bits (677), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 201/526 (38%), Positives = 300/526 (57%), Gaps = 32/526 (6%) Query: 11 LPLALRIALTFGTLLLLCVLAGAIGLWQLHLVGSKLDAVVNDGNRNLALAQD--LSQQVH 68 + + R+ L FG +L L + A G+ QLH V + +++ L +A++ +S Sbjct: 7 MKIGARLMLGFGVVLALSIAIAADGIRQLHAVSAITRSMLE-----LPIAKERMVSDWAA 61 Query: 69 IGVESFQSVIIIS---DKAAAEAAMQRGGAAHERFITQRKALLEAVSDQQTRGLVETIFA 125 I S I ++ D A A+ + + ++ + + L ++ Q + L I Sbjct: 62 ITKASIARTIGVAKSADPALAQFSAKFAADDSKQSMEIIQKLEPLLNTDQEKELYAKIL- 120 Query: 126 INDQRAEPAFGR--FVQLSMTGQREEAGAWLATQLNPALSQLQAAIKALIDFQTARNQQL 183 D R GR ++L G+ EA + T PA + ++ + R Q Sbjct: 121 --DVRKSFLAGREGVMKLKTEGKEAEAAKYFDTTFLPAADSFKNHFTEFVELE--RKQMD 176 Query: 184 QQQSQRD-----STRGRWLMAACFLACILF-AGGAGYGLMRTMRKSLGGEPHDALQVARE 237 +Q STR L++A LA +F A G+ R ++ A+ AR Sbjct: 177 AGTAQLSDVEAASTRQLMLLSAMVLAFGIFCAWRLTIGITRPLKT--------AVDAARR 228 Query: 238 IADGNLMVRVPVAGHDQAS-MMAAMREMRDKLIEVVGVVNHNAQAVAAASQEIAHGHHDL 296 +A G+L + D+ ++AA+++M D L +VG V + + AS EIA G+ DL Sbjct: 229 VAGGDLTNDIKAESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDL 288 Query: 297 SERTEIQASSLQQTTASMGELSSKVRYTAEQSALACRLSEQAADATRSGREVVERVITQM 356 S RTE QASSL++T +SM EL+S V+ A+ + A +L+ A++ G +VV +V+ M Sbjct: 289 SSRTEQQASSLEETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTM 348 Query: 357 QDIDTSSGKIVDIISVIEGLAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSA 416 I+ SS KIVDIISVI+G+AFQTNILALNAAVEAARAGEQGRGFAVVATEVR+LAQRSA Sbjct: 349 SSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSA 408 Query: 417 AASREIKQLILASVDSSAAASKLSREAGAAMQQVVQSIDRVSAVMNDISSANQEQSTGIG 476 +A++EIK LI SV +KL EAGA M ++V SI RV+ +M +I++A+QEQS GI Sbjct: 409 SAAKEIKALIGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIE 468 Query: 477 EVNQALIQLDDLTQKNAALVEEATAASIFLKDKASELKRSVLTFQL 522 ++NQA+ Q+D +TQ+NA+LVEEA AA+ ++D+A +L + V F+L Sbjct: 469 QINQAIGQMDHVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKL 514 >gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 264 bits (675), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 168/372 (45%), Positives = 246/372 (66%), Gaps = 7/372 (1%) Query: 156 TQLNPALSQLQAAIKALIDFQTARNQQLQQQSQRDSTRGRWLMAACFLACILFAGGAGYG 215 T+++PA++ +++A++ FQ Q+ + GR ++ ++ + + Sbjct: 152 TKMDPAMAAYNESVQAVVSFQQVIFQRAKADVDALYASGRTILITLGSIALILSAFLAWL 211 Query: 216 LMRTMRKSLGGEPHD-ALQVAREIADGNLMVRVPVAGHDQAS-MMAAMREMRDKLIEVVG 273 L R++ + P D A+ VAR +A G+L ++ + +D+ ++ A+R+M D L++ V Sbjct: 212 LSRSITR-----PLDYAVSVARTVASGDLRNKIQSSSNDETGQLLRALRDMNDGLVQSVS 266 Query: 274 VVNHNAQAVAAASQEIAHGHHDLSERTEIQASSLQQTTASMGELSSKVRYTAEQSALACR 333 V + +A AS +IA G+ DLS RTE QASSL++T +SM EL+S V+ A+ + A + Sbjct: 267 QVRTGIETIATASNQIAAGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQ 326 Query: 334 LSEQAADATRSGREVVERVITQMQDIDTSSGKIVDIISVIEGLAFQTNILALNAAVEAAR 393 L+ A+ G EVV RV+ M+ I+ S+ KIVDII VI+G+AFQTNILALNAAVEAAR Sbjct: 327 LAVSASGVAEKGGEVVSRVVDTMEQINASAKKIVDIIGVIDGIAFQTNILALNAAVEAAR 386 Query: 394 AGEQGRGFAVVATEVRTLAQRSAAASREIKQLILASVDSSAAASKLSREAGAAMQQVVQS 453 AGEQGRGFAVVA+EVR LAQRSAAA++EIK LI SVD SKL EAG M +VVQS Sbjct: 387 AGEQGRGFAVVASEVRNLAQRSAAAAKEIKTLIGDSVDKVELGSKLVGEAGVTMDEVVQS 446 Query: 454 IDRVSAVMNDISSANQEQSTGIGEVNQALIQLDDLTQKNAALVEEATAASIFLKDKASEL 513 + V+ +M++I +A+QEQS GI +VNQA+ Q+D +TQ+NAALVEEA AA+ L ++A++L Sbjct: 447 VKHVTDIMSEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAAKL 506 Query: 514 KRSVLTFQLPLI 525 +V F+L I Sbjct: 507 AEAVSVFKLDSI 518 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.127 0.340 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 830,022 Number of extensions: 25496 Number of successful extensions: 214 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 164 Number of HSP's successfully gapped: 21 Length of query: 526 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 438 Effective length of database: 895,685 Effective search space: 392310030 Effective search space used: 392310030 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)