BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4367.p
         (303 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981830|ref|YP_001354107.1| hypothetical protein mma_2417 [...    59   4e-10

>gi|152981830|ref|YP_001354107.1| hypothetical protein mma_2417
           [Janthinobacterium sp. Marseille]
          Length = 314

 Score = 58.9 bits (141), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 89/210 (42%), Gaps = 7/210 (3%)

Query: 101 SILGGQLAFHALAPLLDVDARVAGRSFHSRGLGDITVGPALA-YHASPALHYALGLDITM 159
           S LG  L +   +  L   +  +G S  + G+ DI V P +A +H S   H +L L I  
Sbjct: 104 SALGIPLQYIKASTSLQAGSLASGSSDSTTGIADILVTPIIAGFHFSKTEHMSLSLPIYA 163

Query: 160 PSGQYSLTNPSSLGKNIWVYQPLVALSYIQPEGVNADIKLMYDFNGRNGATQTRSGQAIH 219
           PS  Y     ++ G+N W + P +A + +  +G       M  F  +N  T  R+   + 
Sbjct: 164 PSASYDPKRLANDGQNTWTFMPTIAYTRLNKDGGEFTAMGMLQFYTKNKDTDYRNAPLLV 223

Query: 220 ADYALGWGFGNGLVAGVGGYLYQQVTNDSGANA---AAGKSQALAIGPNLKYDNGKGF-- 274
           ++             GV G L  Q+ +D GA A      +  A+ +GP + +    G   
Sbjct: 224 SEALWTTRVAKDTNLGVVGGLIYQLGDDKGALADRLNGFRGSAVGLGPIMTWSGKIGSHP 283

Query: 275 -IITAKFQQEYDARNRPEGKQFYVKAILPF 303
              +A+   + D ++RP+G    +   L F
Sbjct: 284 GSASARAVWDIDTKDRPKGYSIGISLSLLF 313


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.138    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 776,605
Number of extensions: 35524
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 220
Effective length of database: 914,170
Effective search space: 201117400
Effective search space used: 201117400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)