BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4366.p (262 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Jant... 104 5e-24 gi|152982667|ref|YP_001354167.1| glucose-1-dehydrogenase, (3-oxo... 103 8e-24 gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 92 3e-20 gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Jant... 91 7e-20 gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reduc... 87 8e-19 >gi|152982900|ref|YP_001352586.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 278 Score = 104 bits (260), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 124/252 (49%), Gaps = 8/252 (3%) Query: 2 KDLEGKVAVVTGGATLIGAGVVARLRSYGVKVALFDIDADGGQRVAGEDR---SACRFWR 58 ++ ++TG T IG G +VA+ + G +A E R + F Sbjct: 28 NEMNTPTVLITGALTGIGRATAFAFAREGYRVAVSGRREEAGNALAAELRALGNEAEFLL 87 Query: 59 VDITDDAQVSHAVEEVAAHFGRLDFLVNLAAS--YLDDGAASSRQDWLKTLDVNLVSAVM 116 D+ +A V + VE+ FGR+D VN A + L S ++ +T VN++ ++ Sbjct: 88 ADVRFEADVRNLVEQTVVRFGRIDVAVNNAGTEGQLAPIVEQSAANYAETFGVNVLGTML 147 Query: 117 A-AHAVRPYLVKGGGGAIVNFTSISSKVAQTGRWLYPVSKAALVQVTRNMAMDFAGDAIR 175 + H +R L +G G +I+N +S++ KV G +Y SK A+ +T++ A++ A +R Sbjct: 148 SLKHEMRVMLAQGSG-SIINLSSVAGKVGIAGASVYVASKHAVEGLTKSAALEGAAAGVR 206 Query: 176 VNSVSPGWTWSRVMDELTGGDRAKTDRVAADFHLLKRVGNPEEVADVVAFLLSGHASFVT 235 VN+V+PG + ++D GG A R P+E+A + FL S S++T Sbjct: 207 VNAVAPGPVATEMLDRFVGGSEENKAGFLATIP-AGRAATPDEIAQTIVFLASDKVSYLT 265 Query: 236 GADYAVDGGYSA 247 G AVDGG++A Sbjct: 266 GQSIAVDGGHTA 277 >gi|152982667|ref|YP_001354167.1| glucose-1-dehydrogenase, (3-oxoacyl-(acyl carrier protein) reductase) [Janthinobacterium sp. Marseille] Length = 258 Score = 103 bits (258), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 89/256 (34%), Positives = 121/256 (47%), Gaps = 11/256 (4%) Query: 1 MKDLEGKVAVVTGGATLIGAGVVARLRSYGVKVALFDIDADGGQRVAGE-DRSA--CRFW 57 M KVA+VTGG + IG V ARL G V + DA QRVA E D S RF Sbjct: 1 MNSFSSKVAIVTGGGSGIGKEVAARLVKAGANVVIGGRDAAKLQRVATEIDPSGDHVRFH 60 Query: 58 RVDITDDAQVSHAVEEVAAHFGRLDFLVNLAASYLDDG---AASSRQDWLKTLDVNLVSA 114 DI A + V+ FG +D L+N A + + DW LD L Sbjct: 61 AGDIAQPATATALVDLAKQAFGGVDILINNAGVFRPKAFLEVEEAEYDWF--LDTILKGK 118 Query: 115 VMAAHAVRPYLVKGGGGAIVNFTSI--SSKVAQTGRWLYPVSKAALVQVTRNMAMDFAGD 172 A A + GGGAIV S+ + T Y + A + +TRN+A++ A Sbjct: 119 FFMAQAAAKAMKLRGGGAIVQTGSLWALQAIGATPSAAYSAANAGVHALTRNLAIELAAS 178 Query: 173 AIRVNSVSPGWTWSRVMDELTGGDRAKTDRVAAD-FHLLKRVGNPEEVADVVAFLLSGHA 231 IR+N+V+PG + V + D+ K A + FH L R G P +VA+ + FL S +A Sbjct: 179 NIRINTVAPGVVETPVYNTFMTDDQVKATLPAFNAFHPLGRNGQPADVAEAILFLASANA 238 Query: 232 SFVTGADYAVDGGYSA 247 S++TG +VDGG A Sbjct: 239 SWITGTVLSVDGGVMA 254 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 92.0 bits (227), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 116/245 (47%), Gaps = 9/245 (3%) Query: 3 DLEGKVAVVTGGATLIGAGVVARLRSYGVKVALFDIDADGGQRVAGEDRSACRFWRVDIT 62 DL G+VA+VTG + IG + L G KV G ++ + + +D+ Sbjct: 5 DLSGQVALVTGASRGIGRAIAQELAKLGAKVIGTATSESGAAAISEYLGNGGKGVVLDVN 64 Query: 63 DDAQVSHAVEEVAAHFGRLDFLVNLAASYLDDGAASSR-QDWLKTLDVNLVSAVMAAHAV 121 D A+ ++E+ FG + LVN A D A + ++W + NL + + AV Sbjct: 65 DAARSVALIDEIQKEFGAVSILVNNAGITQDQLAMRMKDEEWDSVIATNLTAVGRLSRAV 124 Query: 122 RPYLVKGGGGAIVNFTSISSKVAQTGRWLYPVSKAALVQVTRNMAMDFAGDAIRVNSVSP 181 ++K G I+N TS+ G+ Y +KA + ++R +A + I VN ++P Sbjct: 125 LRGMMKAKTGRIINITSVVGSSGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVNCIAP 184 Query: 182 GWTWSRVMDELTGGDRAKTDRVAADFHL--LKRVGNPEEVADVVAFLLSGHASFVTGADY 239 G+ + + L+ ++AA L R+G PE++A V+FL S AS++TG Sbjct: 185 GFIDTDMTKTLS------EQQIAALLQQVPLGRLGVPEDIAAAVSFLASPQASYITGTTL 238 Query: 240 AVDGG 244 V+GG Sbjct: 239 HVNGG 243 >gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Janthinobacterium sp. Marseille] Length = 246 Score = 90.9 bits (224), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 119/243 (48%), Gaps = 8/243 (3%) Query: 7 KVAVVTGGATLIGAGVVARLRSYGVKVALF----DIDADGGQRVAGEDRSACRFWRVDIT 62 ++A+VTGG +G + +L + G +V + AD ++ E + D++ Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVVTTYSPGNKKADEWLKLMKESGYDFHAYPCDVS 62 Query: 63 DDAQVSHAVEEVAAHFGRLDFLVNLAASYLD-DGAASSRQDWLKTLDVNLVSAVMAAHAV 121 D V ++ G +D LVN A D + DW + NL S V Sbjct: 63 DYDSAQQCVAQIEKEMGPVDVLVNNAGITRDITFKKMGKPDWDAVMATNLDSVFNMTKPV 122 Query: 122 RPYLVKGGGGAIVNFTSISSKVAQTGRWLYPVSKAALVQVTRNMAMDFAGDAIRVNSVSP 181 +V+ G G I+N +S++ + G+ Y +KA + T+ +A++ A A+ VN++SP Sbjct: 123 CDGMVERGWGRIINISSVNGQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVNTISP 182 Query: 182 GWTWSRVMDELTGGDRAKTDRVAADFHLLKRVGNPEEVADVVAFLLSGHASFVTGADYAV 241 G+ ++++ + + D + R+G PEE+A +VA+L S A+F+TGA+ A+ Sbjct: 183 GYIGTKMVMAIP---QDVLDTKIVPQIPMGRLGKPEEIAGLVAYLASDEAAFLTGANIAI 239 Query: 242 DGG 244 +GG Sbjct: 240 NGG 242 >gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reductase family oxidoreductase [Janthinobacterium sp. Marseille] Length = 249 Score = 87.4 bits (215), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 84/255 (32%), Positives = 127/255 (49%), Gaps = 19/255 (7%) Query: 2 KDLEGKVAVVTGGATLIGAGVVARLRSYGVKVALFDID-ADGGQRVAGEDRSA---CRFW 57 L GKVA V GG+ IGA +V RL G VA + AD + VA E +A Sbjct: 5 NQLTGKVAFVQGGSRGIGAAIVKRLARDGAAVAFTYVSSADKAKAVAQEIEAAGGRALAI 64 Query: 58 RVDITDDAQVSHAVEEVAAHFGRLDFLVN----LAASYLDDGAASSRQDWLKTLDVNLVS 113 D +D + V A++ A FGR+D LVN LA + ++D +D+ +T+ VN+ S Sbjct: 65 HADSSDASAVQQAIQAAAKAFGRIDILVNNAGVLALAPVED---FKLEDFDRTVAVNVRS 121 Query: 114 AVMAAHAVRPYLVKGGGGAIVNFTSISS-KVAQTGRWLYPVSKAALVQVTRNMAMDFAGD 172 +A ++ G GG I+ S ++ ++ G +Y +SKAA+V +T+ +A D Sbjct: 122 VFVATQEAARHM--GEGGRIITIGSTNADRMPFAGGAVYAMSKAAIVGLTKGLARDLGPR 179 Query: 173 AIRVNSVSPGWTWSRVMDELTGGDRAKTDRVAADFHLLKRVGNPEEVADVVAFLLSGHAS 232 I VN+V PG + + D A T + + R G EE+A VA+L A Sbjct: 180 GITVNNVQPGPVDTDM--NPANSDFADTLK---GLMAIGRYGKDEEIASFVAYLAGPEAG 234 Query: 233 FVTGADYAVDGGYSA 247 ++TGA +DGG+ A Sbjct: 235 YITGASLTIDGGFGA 249 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.134 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 661,779 Number of extensions: 27652 Number of successful extensions: 163 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 131 Number of HSP's successfully gapped: 18 Length of query: 262 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 181 Effective length of database: 921,564 Effective search space: 166803084 Effective search space used: 166803084 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)