BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4351.p
         (205 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980801|ref|YP_001354169.1| hypothetical protein mma_2479 [...   102   1e-23

>gi|152980801|ref|YP_001354169.1| hypothetical protein mma_2479
           [Janthinobacterium sp. Marseille]
          Length = 206

 Score =  102 bits (255), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 98/194 (50%), Gaps = 17/194 (8%)

Query: 21  IPAILGPRPIGWISTCNANGRANVAPYSFFNIFNYRPPIVAF-----ASVGKKDSVRNAE 75
           + A + PRPI W+++ + +G  N AP+SFFN+  + PP V       A  G KD+  N  
Sbjct: 17  LTATVTPRPIAWVTSQSTDGVVNAAPFSFFNVMGHEPPTVTLGLLRKADGGYKDTAANIM 76

Query: 76  ATGEFVYNLATRPLAEQVNLSSLEQ-SEVDEFALARLTPAPGMVVAAPRVGESPVAMECK 134
           ATGEFV NL +  +AE +N +      EVDE  LA L+  P + VA PR+   PV+ EC+
Sbjct: 77  ATGEFVINLVSEAMAESMNETCTNAPPEVDELQLAGLSAVPSLAVAPPRIAGCPVSFECR 136

Query: 135 VTQIQQLTALDGRTLETWMVFGEVVAVHIDQTLLVDGVYA---TAAAQPILRGGGPADYF 191
                 L+++     +  +V   V+  HI+   L+D       T A + + R  G   Y 
Sbjct: 137 -----SLSSIVTGPCQV-IVVATVLRAHIEDKFLLDAERCHVDTPALKLVSRMHGSGWYA 190

Query: 192 QVLQEGLFQMRRPK 205
           +     LFQ+ RP 
Sbjct: 191 R--STDLFQLTRPS 202


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 501,840
Number of extensions: 19712
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 126
Effective length of database: 928,958
Effective search space: 117048708
Effective search space used: 117048708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)