BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4349.p
         (358 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980102|ref|YP_001354309.1| sulfonate/nitrate transport sys...    55   8e-09

>gi|152980102|ref|YP_001354309.1| sulfonate/nitrate transport system
           substrate-binding protein [Janthinobacterium sp.
           Marseille]
          Length = 317

 Score = 54.7 bits (130), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 5/105 (4%)

Query: 98  TIPA---AGGVDSTALIVGDYSNGNDGIVLKGKN--KKLADIKGQSVQLVEFSVSHYLLA 152
           T+P    A G   T +     S     IV+K  +  K LAD++G+ V   + + +HYLL 
Sbjct: 94  TVPVFAQAAGAQLTYIAQESPSPSAQAIVVKADSNIKTLADLRGKRVGFAKAAGAHYLLI 153

Query: 153 RALESVGLRERDVKVVNTSDADITAAFATPAVTSTVTWNPMLSSI 197
            ALE  GL  +D+++   + AD  AAF   A+ + V W+P L+++
Sbjct: 154 AALEKAGLSLKDIQLAYLAPADGRAAFEREAIDAWVIWDPFLAAV 198


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 740,754
Number of extensions: 28865
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 274
Effective length of database: 910,473
Effective search space: 249469602
Effective search space used: 249469602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)