BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4348.p (271 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980281|ref|YP_001352431.1| sulfonate/nitrate transport sys... 91 9e-20 gi|152981359|ref|YP_001354307.1| ABC-type nitrate/sulfonate/bica... 87 1e-18 gi|152981495|ref|YP_001352171.1| ABC-type nitrate transport syst... 81 5e-17 gi|152981435|ref|YP_001354775.1| ABC-type nitrate/sulfonate/bica... 70 1e-13 >gi|152980281|ref|YP_001352431.1| sulfonate/nitrate transport system permease protein [Janthinobacterium sp. Marseille] Length = 276 Score = 90.5 bits (223), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 75/256 (29%), Positives = 122/256 (47%), Gaps = 7/256 (2%) Query: 15 LLTLLPFLILILLYVVGSATRLADNPNDKLLPSLAQMVDAIRHMAFMEDPRTGDYLLWVD 74 L L+P+++ +LL V + ++LP + A +A + LW Sbjct: 27 LKKLVPWIVPVLLISVWQIASQLGWLSSRILPEPFAVAKAAWELALSGE-------LWTH 79 Query: 75 TLASLQRVLLGLGIAALAGLVLGIANGIFPVLRAGFSPLLTVISMVPPLAILPILFIVLG 134 SL R + GL+LG+ G F L +I +P LA++P++ + G Sbjct: 80 VKVSLWRATTSFAVGGGLGLLLGLLTGTFKTAETLLDTTLQMIRNIPALALIPLVILWFG 139 Query: 135 LDELSKVMLIVIGVTPLLARDLEHTGRAIPAELLIKAQTLGANSWTLVLRVALPQMLARL 194 ++E SK+ L+ +GV + + H R++ L+ A++ G + W+L V LP L + Sbjct: 140 IEETSKIFLVAVGVFFPVYLNTFHGIRSVDKGLIEMAKSYGLSGWSLYRDVILPGALPSI 199 Query: 195 LVSLRLSLGAAWLFLISAEAISATAGLGYRIFLVRRYLAMDVILPYVVWITLLAWLMDWL 254 LV +R SLG W+ LI AE ISA +G+GY R +L DV+L ++ LL L D + Sbjct: 200 LVGVRFSLGLVWVLLIVAETISAQSGIGYMTMNAREFLQTDVVLVGILLYALLGKLADVV 259 Query: 255 LRAVHRRFFPWAEGGR 270 R + + W G R Sbjct: 260 SRTLEGYWLRWHPGYR 275 >gi|152981359|ref|YP_001354307.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 296 Score = 87.4 bits (215), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 110/225 (48%), Gaps = 8/225 (3%) Query: 43 KLLPSLAQMVDAIRHMAFMEDPRTGDYLLWVDTLASLQRVLLGLGIAALAGLVLGIANGI 102 +LLP +++V + A +E L V AS+ RV G I A+ ++ G+ G+ Sbjct: 73 RLLPPPSEIVQTLS--ALLEQG------LLVHISASVARVFSGYAIGAVLAILFGLFVGL 124 Query: 103 FPVLRAGFSPLLTVISMVPPLAILPILFIVLGLDELSKVMLIVIGVTPLLARDLEHTGRA 162 A F P + +P LA +P+L + G+DE K+ LI IG + L R Sbjct: 125 SKHAEAFFEPTFQALRAIPSLAWVPLLLLWFGIDETPKITLIAIGAFFPIYLGLVSGIRN 184 Query: 163 IPAELLIKAQTLGANSWTLVLRVALPQMLARLLVSLRLSLGAAWLFLISAEAISATAGLG 222 + +L+ + G ++ L R+ LP L L LR L AW+FL++AE I+AT G+G Sbjct: 185 VDRKLIELGEIYGLSAPALARRIVLPAALPSLFTGLRNGLSLAWMFLVAAELIAATKGIG 244 Query: 223 YRIFLVRRYLAMDVILPYVVWITLLAWLMDWLLRAVHRRFFPWAE 267 Y + R DV+L + + +L L D LL+ + R W++ Sbjct: 245 YLLTDGRETSRPDVVLAAIFLLAILGKLTDGLLKWLETRKLAWSD 289 >gi|152981495|ref|YP_001352171.1| ABC-type nitrate transport system, permease component [Janthinobacterium sp. Marseille] Length = 309 Score = 81.3 bits (199), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 95/178 (53%), Gaps = 3/178 (1%) Query: 50 QMVDAIRHMAFMEDPRTGDYLLWVDTLASLQRVLLGLGIAALAGLVLGIANGIFPVLRAG 109 Q A+ F + + W + LASL+RV +G G+AAL G+ LG G F L Sbjct: 91 QSAQALFADPFYSNGPNDQGIGW-NILASLKRVGMGFGMAALVGIPLGFMIGRFKFLSGM 149 Query: 110 FSPLLTVISMVPPLAILPI-LFIVLGLDELSKVMLIVIGVTPLLARDLEHTGRAIPAELL 168 F+P+++++ V PLA LPI L + D + + + + P++ R +P + + Sbjct: 150 FNPIISLLKPVSPLAWLPIGLLVFKAADPAAIWSIFICSIWPMIINTAVGVQR-VPQDYM 208 Query: 169 IKAQTLGANSWTLVLRVALPQMLARLLVSLRLSLGAAWLFLISAEAISATAGLGYRIF 226 A+ L + W +V ++ P +L +L +RL++G AWL +++AE ++ G+G+ ++ Sbjct: 209 NVAKVLKLSEWKIVTKILFPSVLPYMLTGVRLAIGTAWLVIVAAEMLTGGVGIGFWVW 266 >gi|152981435|ref|YP_001354775.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 276 Score = 70.5 bits (171), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 103/238 (43%), Gaps = 7/238 (2%) Query: 29 VVGSATRLADNPNDKLLPSLAQMVDAIRHMAFMEDPRTGDYLLWVDTLASLQRVLLGLGI 88 V S T+L P D L I AF E T LW S+ RV G Sbjct: 41 VKASGTQLIPLPKDVGLMLYDFAFGGIYDDAFSE---TLPLHLW----KSVTRVYGGFFA 93 Query: 89 AALAGLVLGIANGIFPVLRAGFSPLLTVISMVPPLAILPILFIVLGLDELSKVMLIVIGV 148 AAL G+ LG+ G V+R P L ++ VP A LP+ I G+ + + L+ +G Sbjct: 94 AALVGIPLGLLIGRIKVIRDLLDPTLQLLRPVPVTAWLPLSMIFFGIGPNAAIFLVFLGA 153 Query: 149 TPLLARDLEHTGRAIPAELLIKAQTLGANSWTLVLRVALPQMLARLLVSLRLSLGAAWLF 208 + + +A+ L A LG N +L +V LP + +L LRL G AW+ Sbjct: 154 FYPIVFNTTFGVKAVDNRLFEAALMLGCNGSSLFRQVVLPAAMPSILNGLRLGHGFAWIL 213 Query: 209 LISAEAISATAGLGYRIFLVRRYLAMDVILPYVVWITLLAWLMDWLLRAVHRRFFPWA 266 ++ E GLG I R D+++ +V I ++ + D +L A++ W+ Sbjct: 214 IVVGEMTGVPEGLGAVIMDGRMLSRTDLVIAGMVVIGIVGYSTDRILVAINNYLLKWS 271 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.330 0.145 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 550,709 Number of extensions: 18988 Number of successful extensions: 101 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 97 Number of HSP's successfully gapped: 6 Length of query: 271 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 189 Effective length of database: 917,867 Effective search space: 173476863 Effective search space used: 173476863 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)