BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4347.p (258 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 164 4e-42 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 156 1e-39 gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport sys... 152 2e-38 gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-bi... 145 2e-36 gi|152980243|ref|YP_001354174.1| sulfonate/nitrate transport sys... 128 3e-31 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 164 bits (416), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 87/222 (39%), Positives = 135/222 (60%), Gaps = 11/222 (4%) Query: 1 MSYIDIRNVWQQYDQNVVLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKGQL 60 M+ ++IRN+ +++ N V++ ++L +E G+F TL+G SGCGK+T LR++ G + P GQ+ Sbjct: 1 MALLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDAGQI 60 Query: 61 LLQGQPFPAEPDATRGV--VFQRYSVFPHLNVLDNVAIGLELPQAPLLGRLFGGSKRRAR 118 LL G P R V VFQ Y++FPH+ V N+A LE+ P K + Sbjct: 61 LLDGVDLTGVPPEQRPVRTVFQNYALFPHMTVGGNIAFPLEMANTP---------KAEIQ 111 Query: 119 EQAAQLLHRVGLGHALNLYPSSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPGIRKE 178 ++ + L V L YP LSGG +QR++IA+AL+ RP++LLLDEP ALD +R++ Sbjct: 112 KKVDEALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQ 171 Query: 179 MHTLLLDLWQDSGLTVFMVTHDLSEGFTLGTRLLVFDKVRVD 220 M L++L ++ G+T VTHD +E L R+ V +K +V+ Sbjct: 172 MQIELINLQKEVGITFIYVTHDQAEALALSHRIAVMNKGQVE 213 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 156 bits (395), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 92/238 (38%), Positives = 134/238 (56%), Gaps = 18/238 (7%) Query: 4 IDIRNVWQQYDQNVVLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKGQLLLQ 63 I+++N+ +Q+ V L ++L G+ L+G SGCGK+T LR++ G E+P GQ+LL Sbjct: 3 IEVKNIQKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 64 GQPFPAEPDATR--GVVFQRYSVFPHLNVLDNVAIGLELPQAPLLGRLFGGSKRRAREQA 121 G+ A R G VFQ Y++F H+ V +N+A GL + P R S+ + +E+ Sbjct: 63 GEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRV--RPAATR---PSESQIKEKV 117 Query: 122 AQLLHRVGLGHALNLYPSSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPGIRKEMHT 181 +LL V L + YP LSGG +QR+A+A+AL V PRVLLLDEPFGALD +RKE+ Sbjct: 118 TKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRR 177 Query: 182 LLLDLWQDSGLTVFMVTHDLSEGFTLGTRLLVFDKVRVD-----------PQYPQAYG 228 L L D +T VTHD E + ++++ +K V+ P P YG Sbjct: 178 WLRRLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNPASPFVYG 235 >gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 265 Score = 152 bits (384), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 95/245 (38%), Positives = 129/245 (52%), Gaps = 24/245 (9%) Query: 4 IDIRNVWQQYD---QNV-VLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKGQ 59 IDI+ V + + Q V L +NL + +G+F L+GASGCGKST LR++ G E S G Sbjct: 14 IDIKGVSKVFSIGGQTVQALREVNLTINKGEFVCLIGASGCGKSTLLRIMAGFETTSSGS 73 Query: 60 LLLQGQPFPAEPDATRGVVFQRYSVFPHLNVLDNVAIGLELPQAPLLGRLFGGSKRRARE 119 + G P P RG+VFQ Y +FP L V +N+ G P K + E Sbjct: 74 ANMYGMPIDG-PSPERGMVFQDYGLFPWLTVKENIGFGQRQRNLP---------KAKLEE 123 Query: 120 QAAQLLHRVGLGHALNLYPSSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPGIRKEM 179 +A VGL N YP LSGGM+QR+AIA+ L VLL+DEPFGALD R+++ Sbjct: 124 LSAYYTDMVGLTKFANYYPGQLSGGMKQRVAIARVLANDCEVLLMDEPFGALDALTREKL 183 Query: 180 HTLLLDLWQDSGLTVFMVTHDLSEGFTLGTRLLVFDKVRVDPQYPQAYGAHITYDIALNE 239 LL++W+ + +TV VTH + E L R++V A I DI L+ Sbjct: 184 QQDLLEIWERTKVTVVFVTHAVEEAVMLSDRVVVM----------TAGPGRIEEDIKLDL 233 Query: 240 ARARE 244 AR R+ Sbjct: 234 ARPRD 238 >gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 268 Score = 145 bits (367), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 88/220 (40%), Positives = 125/220 (56%), Gaps = 19/220 (8%) Query: 3 YIDIRNVWQQYDQNV----VLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKG 58 +IDI++ + L +NL V +G+F TL+G SGCGKST L L+ G + + G Sbjct: 8 FIDIQHAEMSFSTKKGIFNALTNVNLTVSKGEFITLIGHSGCGKSTLLNLIAGLTQATGG 67 Query: 59 QLLLQGQPFPAEPDATRGVVFQRYSVFPHLNVLDNVAIGLELPQAPLLGRLFGGSKRRA- 117 +LL G A P R VVFQ +S+ P L +NV + +E R+F ++ +A Sbjct: 68 -MLLCGNREIAGPSPERAVVFQNHSLLPWLTCYENVYLAVE--------RVFSATESKAE 118 Query: 118 ---REQAAQLLHRVGLGHALNLYPSSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPG 174 R +AA L VGL HA P+ +SGGM+QR+ IA+AL + P+VLL+DEPFGALD Sbjct: 119 LKARTRAALAL--VGLSHAEQKRPNEISGGMKQRVGIARALSMEPKVLLMDEPFGALDAL 176 Query: 175 IRKEMHTLLLDLWQDSGLTVFMVTHDLSEGFTLGTRLLVF 214 R + LL + +G TV MVTHD+ E L R+++ Sbjct: 177 TRAHLQDELLKIVAATGSTVVMVTHDVDEAVLLSDRIVML 216 >gi|152980243|ref|YP_001354174.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 294 Score = 128 bits (322), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 77/192 (40%), Positives = 109/192 (56%), Gaps = 10/192 (5%) Query: 21 RLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKGQLLLQGQPFPAEPDATRGVVFQ 80 R++ V + L+G SGCGKST L+ + G P +G++ L G+ A P R VVFQ Sbjct: 61 RVSFDVHQADRFVLLGPSGCGKSTLLKAVAGFILPVEGEIRLDGKAVTA-PGPDRIVVFQ 119 Query: 81 RYS-VFPHLNVLDNVAIGLELPQAPLLGRLFGGSKRRAREQAAQLLHRVGLGHALNLYPS 139 + + P V NV L L R G ++ A E+A L +VGL +++P Sbjct: 120 EFDQLSPWKTVKQNVIFPL------LASRTLG--RKEAEERALHYLAKVGLSKFSDVHPH 171 Query: 140 SLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPGIRKEMHTLLLDLWQDSGLTVFMVTH 199 LSGGM+QR+AIA+AL ++PRVLL+DEPF ALD R++M LL LW + T+ VTH Sbjct: 172 QLSGGMKQRVAIARALAMQPRVLLMDEPFAALDALTRRKMQEELLQLWDEVHFTLLFVTH 231 Query: 200 DLSEGFTLGTRL 211 + E +G R+ Sbjct: 232 SIEEALVVGNRI 243 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.139 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 619,994 Number of extensions: 26282 Number of successful extensions: 261 Number of sequences better than 1.0e-08: 57 Number of HSP's gapped: 172 Number of HSP's successfully gapped: 60 Length of query: 258 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 177 Effective length of database: 921,564 Effective search space: 163116828 Effective search space used: 163116828 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)