BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4346.p
         (243 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981379|ref|YP_001353341.1| hypothetical protein mma_1651 [...    75   3e-15

>gi|152981379|ref|YP_001353341.1| hypothetical protein mma_1651
           [Janthinobacterium sp. Marseille]
          Length = 198

 Score = 75.1 bits (183), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 9/191 (4%)

Query: 23  TSFILKRGQSLRITDIEGGANVSMMMLNAQQPSERLNLPDTLKGQHTARLQAGHCLYSDM 82
           T FILK+GQ LR+ D +G     +M  N    +E L+   ++   +T  L  GH LYS+ 
Sbjct: 16  TGFILKKGQVLRVIDPQGEQVSDLMAFNEHDVNESLSSGRSIDYANTIYLTTGHVLYSNR 75

Query: 83  GRVLAAITEDTCGWHDSFGGVLNAEEVQEKYGQGRYQELRNGFYRNGVDNLLVEMGKWNL 142
              +  I ED  G HD      + E  +  Y         +  + +   NL+  +  + +
Sbjct: 76  STPMLTIIEDQVGRHDFLLTPCSPETFKIIYNN-------HAHHPSCFANLVEHLAPFGI 128

Query: 143 DLQDLLMVVNLFSRVAVDEQGVFHFVPGNAKAGDYIELAAPMETLIILTALQHPMDPHPH 202
               +    N+F  VA+   G     P  +KAG +I L A M+ ++ +TA    M    +
Sbjct: 129 QPDHIPTTFNIFMNVAIAPDGELSIDPPRSKAGQFIALRAEMDLIVGVTACSAEMS--NN 186

Query: 203 YAPRPVRLEWL 213
           Y+ +P+ +E +
Sbjct: 187 YSFKPIDIEII 197


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 593,805
Number of extensions: 24318
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 162
Effective length of database: 921,564
Effective search space: 149293368
Effective search space used: 149293368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)