BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4345.p
         (211 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981379|ref|YP_001353341.1| hypothetical protein mma_1651 [...    95   4e-21

>gi|152981379|ref|YP_001353341.1| hypothetical protein mma_1651
           [Janthinobacterium sp. Marseille]
          Length = 198

 Score = 94.7 bits (234), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 88/182 (48%), Gaps = 2/182 (1%)

Query: 27  FNLKAGQTVRLLDLEGNQAIDTLFYSAANPRERYDPQRTLRRQNRAYLGAGSVLYSNLGR 86
           F LK GQ +R++D +G Q  D + ++  +  E     R++   N  YL  G VLYSN   
Sbjct: 18  FILKKGQVLRVIDPQGEQVSDLMAFNEHDVNESLSSGRSIDYANTIYLTTGHVLYSNRST 77

Query: 87  ALATIVADTCGRHDTLGGACAQESNTVRYALEKRYMHSCRDNFLCACLHDGRLTKRDIGA 146
            + TI+ D  GRHD L   C+ E+  + Y     +  SC  N L   L    +    I  
Sbjct: 78  PMLTIIEDQVGRHDFLLTPCSPETFKIIYN-NHAHHPSCFAN-LVEHLAPFGIQPDHIPT 135

Query: 147 NINFFMNVPVTPEGGLTFEDGISAPGKYVELHAEQDLIVLISNCPQLNNPCNGWNPTAAE 206
             N FMNV + P+G L+ +   S  G+++ L AE DLIV ++ C    +    + P   E
Sbjct: 136 TFNIFMNVAIAPDGELSIDPPRSKAGQFIALRAEMDLIVGVTACSAEMSNNYSFKPIDIE 195

Query: 207 VL 208
           ++
Sbjct: 196 II 197


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 506,043
Number of extensions: 20435
Number of successful extensions: 41
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 132
Effective length of database: 928,958
Effective search space: 122622456
Effective search space used: 122622456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)