BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4344.p
         (1207 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981095|ref|YP_001354662.1| biotin carboxylase [Janthinobac...   327   3e-90

>gi|152981095|ref|YP_001354662.1| biotin carboxylase
           [Janthinobacterium sp. Marseille]
          Length = 453

 Score =  327 bits (837), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 183/449 (40%), Positives = 273/449 (60%), Gaps = 9/449 (2%)

Query: 1   MFDHLLIANRGAIACRILRTLRTLEVTGVCVYSEADLGSLHVLQADRAISLGEGAAAQTY 60
           MF+ +LIANRG IA RI R  R + +  V V+SEAD  + +V  AD ++ +G   ++ +Y
Sbjct: 1   MFEKILIANRGEIALRIQRACREMGIKTVVVHSEADRDAKYVKLADESVCIGPAPSSLSY 60

Query: 61  LAVDKILAAARDSGAQAIHPGYGFLSENAAFAEACEAAGIAFVGPTPAQLRLFGLKHTAR 120
           L +  I++AA  + A+AIHPGYGFLSENA FAE  E +G  F+GP    +R+ G K +A+
Sbjct: 61  LNMPAIISAAEVTDAEAIHPGYGFLSENADFAERVEQSGFVFIGPRSDSIRMMGDKVSAK 120

Query: 121 ALAREQGVPMLEGT--GLLENLQEALAAAAQVAYPVMLKSTAGGGGIGMRVCRSDEELVD 178
               + GVP + G+   L ++ +E +  A ++ YPV++K+  GGGG GMRV  ++  L++
Sbjct: 121 QAMIKAGVPCVPGSEGALPDDAKEIVQIARKIGYPVIIKAAGGGGGRGMRVVHTEAALLN 180

Query: 179 AFESVRRLGQNNFSDAGVFIEKYIERARHLEVQVFGDGQGEVIALGVRDCSVQRRNQKVL 238
           A    +    + F +  V++EKY+E  RH+E+Q+  D     I LG RDCS+QRR+QKVL
Sbjct: 181 AVTMTKTEAGSAFGNPEVYMEKYLENPRHVEIQILADEHKNAIWLGERDCSMQRRHQKVL 240

Query: 239 EETPAPNLPAGMADALCAAAIKLARAVNYRSAGTVEFVYDSQAGQFYFLEVNTRLQVEHG 298
           EE PAP +P    + +     +  R + YR AGT EF+Y++  G+FYF+E+NTR+QVEH 
Sbjct: 241 EEAPAPGIPRKTIERIGDRCAEACRKMGYRGAGTFEFLYEN--GEFYFIEMNTRVQVEHP 298

Query: 299 VTEQVWGVDLVRWMIELAAGELPPLEQLAATLQPSGHAIQARLYAEDPGRQFQPCPGLLT 358
           VTE + G+D+V+  I +AAGE     Q    L  SGHAI+ R+ AEDP + F P PG + 
Sbjct: 299 VTEMITGIDIVQEQIRIAAGEKLRFRQRDVIL--SGHAIECRINAEDPFK-FTPSPGKIV 355

Query: 359 AVAFPPADGRALRIDTWVEAGCEIPPYFDPMIAKLISWQPTREAARLALDAALEATQLYG 418
           +   P   G  +R+D+   AG  +PP++D M+ K+I++  TRE A   +  AL    + G
Sbjct: 356 SWHAP--GGPGIRVDSHAYAGYYVPPHYDSMVGKVIAYGATREQAIKRMQIALSEMVVEG 413

Query: 419 VETNQHYLRQILADAPFASGQPWTRCLEH 447
           ++TN    R+++ DA F  G      LE 
Sbjct: 414 IQTNIPLHRELMVDARFIEGGTNIHYLEQ 442


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 2,854,804
Number of extensions: 124378
Number of successful extensions: 384
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 1
Length of query: 1207
Length of database: 1,221,021
Length adjustment: 94
Effective length of query: 1113
Effective length of database: 873,503
Effective search space: 972208839
Effective search space used: 972208839
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 135 (56.6 bits)