BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4339.p
         (117 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983423|ref|YP_001353463.1| cobalt-zinc-cadmium resistance ...    57   3e-10

>gi|152983423|ref|YP_001353463.1| cobalt-zinc-cadmium resistance
           protein CzcI [Janthinobacterium sp. Marseille]
          Length = 119

 Score = 57.0 bits (136), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 14/112 (12%)

Query: 13  PVQLSWAAVGSYCQAENDRVPMHLGHHDHPSLK--GDEQADYQKSKPGDRDMDCSLCHF- 69
           P+Q+SWAA   YCQ E++ V +H GHH+H  +    D+++D  KS     D+DC+ CH  
Sbjct: 14  PLQISWAAAAVYCQHESNPVTVHFGHHEHKHIASLSDQKSDVPKSSSAS-DIDCAFCHLG 72

Query: 70  ----CAMKSVQAGSTIVIIAPATAQASSPAHLPHPASHIADGPDKPNWPLAA 117
                 + +    S IV + P     S  A +  P       P++P W  AA
Sbjct: 73  GIAIAEIPAAILISDIVSVTPRIPDTSILASILPP------RPERPKWVYAA 118


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.132    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 302,013
Number of extensions: 11069
Number of successful extensions: 39
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 2
Length of query: 117
Length of database: 1,221,021
Length adjustment: 72
Effective length of query: 45
Effective length of database: 954,837
Effective search space: 42967665
Effective search space used: 42967665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)