BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4332.p (371 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980288|ref|YP_001353254.1| multidrug efflux system transme... 101 9e-23 gi|152981741|ref|YP_001354626.1| acriflavin resistance lipoprote... 98 8e-22 gi|152981819|ref|YP_001351711.1| membrane fusion protein [Janthi... 96 2e-21 gi|152981804|ref|YP_001354023.1| membrane fusion protein [Janthi... 84 1e-17 gi|152981697|ref|YP_001353374.1| HlyD family secretion protein [... 69 4e-13 >gi|152980288|ref|YP_001353254.1| multidrug efflux system transmembrane protein [Janthinobacterium sp. Marseille] Length = 408 Score = 101 bits (251), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 113/396 (28%), Positives = 185/396 (46%), Gaps = 44/396 (11%) Query: 7 FRAKPIAISVVGLVVVFGALYAVRSLRSGGAEHYAMPPLPVSTIRAEA--RAVPENLQVV 64 F IAI+V G++++ GA A SL + A P VS A R+V E Sbjct: 9 FSRSAIAIAV-GVLLIVGA--ATVSLTGRAEKTQAAAPAAVSVTVASVLERSVTEWDDFS 65 Query: 65 ASLQAVREVQLAPDTSGRVTAIHFESGQTVKQGGLLVELYDAPEQ-------ADRAAAVA 117 ++AV V++ P SG + A+HF+ GQ VK+G LL + P + A RA A A Sbjct: 66 GRVEAVERVEIRPRISGTIDAVHFQDGQLVKKGALLFTIDPRPYKAELARAEAARAGAQA 125 Query: 118 KADFAQLQLRRSRELSPAGAESRELLEQRQADADQAVAAVRQLDA-------RIEQKNIR 170 + A+ +L R++ L A ++ L+ R+ +A A ++ DA ++ I Sbjct: 126 RLALAKTELERTKRLLEERAVAQRELDTRENAMQEADANLKATDAAVLTARLNLQYTEIT 185 Query: 171 APFSGQIGIRHVNPGQYLNAGDAIATLT---QADPLYVNFQLPQQDLSRL----TVGAS- 222 AP SG++ + G + G TLT P+YVNF++ + R TVG S Sbjct: 186 APVSGRVSRAEITVGNLVATGPTAPTLTTVVSVSPVYVNFEIDEPTYIRYAGNGTVGNSG 245 Query: 223 -----VQVSVDAVPGRVFTGKISSIEPRIDGETRNVAVQAILPNADRLLKSGMYATARLD 277 V + + + G TG + S + R+D + + V+A+ N D L GMYA R Sbjct: 246 VSKIPVSIGLTSEEGYPRTGNVKSFDNRLDTGSGTIRVRAVFNNEDGTLTPGMYARVRTG 305 Query: 278 LPAVEDGIVLPLTAIQTSASGDSVVLVRGADAQGIGKAVAV-PVVTGQRLNEEVLVTQGV 336 ++ +++ A+ T V++V AD + + V++ P+V G R +V G+ Sbjct: 306 DANAKNALLIDDKAVGTDQDKKYVMVV-SADNKVTYRPVSLGPIVDGLR-----IVRSGL 359 Query: 337 KAGDIVVMAGQNRLPPG-----AVVKINAPAAAAPT 367 + + +V+ G R+ P VVK++A A+A T Sbjct: 360 QKDERIVVNGLQRIRPNDTVTPEVVKMDARVASANT 395 >gi|152981741|ref|YP_001354626.1| acriflavin resistance lipoprotein A precursor [Janthinobacterium sp. Marseille] Length = 422 Score = 97.8 bits (242), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 100/361 (27%), Positives = 171/361 (47%), Gaps = 34/361 (9%) Query: 26 LYAVRSLRSGGAEHYAMPPLPVSTIRAEARAVPENLQVVASLQAVREVQLAPDTSGRVTA 85 +YA+ + + A PP VS + + + ++ ++++R ++ G V Sbjct: 17 IYAIAGCGAKSDQAAAPPPQEVSVVTVQPGVLGVTNELPGRMESIRVAEVRARVPGIVLK 76 Query: 86 IHFESGQTVKQGGLLVELYDAPEQADRA---AAVAKAD----FAQLQLRRSRELSPAGAE 138 F G VK G LL ++ A QA AAVA+ + A+ + +R + L A Sbjct: 77 RVFREGSDVKAGTLLYQIDPAQLQATYNSADAAVARGEATLATAEQKAKRYKPLVETNAV 136 Query: 139 SRELLE-----QRQADADQAVAAVRQLDARIE--QKNIRAPFSGQIGIRHVNPGQYLNAG 191 S++ + ++QA AD A A + +AR+ ++ +P SG+IG V G + G Sbjct: 137 SKQEYDDVAAAEKQAIADLASAKAARENARLSLGYASVTSPISGRIGRALVTEGALVGQG 196 Query: 192 DA--IATLTQADPLYVNFQLPQQDLSRLTVG-----------ASVQVSVDAVPGRVF--T 236 D +A + Q DP+YVN ++ +L + +V++ G+ + Sbjct: 197 DVTPLAIVQQIDPIYVNMTQSANEVLKLKRAMDEGKLKSAGKGAAKVTLVTDDGQEYGRA 256 Query: 237 GKISSIEPRIDGETRNVAVQAILPNADRLLKSGMYATARLDLPAVEDGIVLPLTAIQTSA 296 GK+ + +D + +V ++A +PN D LL GMY AR++ E+ I +P A+ + Sbjct: 257 GKLLFSDLTVDESSGSVTLRAEIPNPDGLLLPGMYVRARIEQAVDENAITVPQQAVLRTP 316 Query: 297 SGDSVVLVRGADAQGIGKAVAVPVVTGQRLNEEVLVTQGVKAGDIVVMAGQNRLPPGAVV 356 G S V+V GAD GK + PV TG ++T G+K GD V++ G ++ PGA V Sbjct: 317 GG-SAVMVVGAD----GKVASRPVQTGSSSGTAWIITDGLKEGDQVIVEGLQKVQPGATV 371 Query: 357 K 357 K Sbjct: 372 K 372 >gi|152981819|ref|YP_001351711.1| membrane fusion protein [Janthinobacterium sp. Marseille] Length = 416 Score = 96.3 bits (238), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 105/384 (27%), Positives = 174/384 (45%), Gaps = 40/384 (10%) Query: 8 RAKPIAISVVGLVVVFGALYAVRSLRSGGAEHYA-----MPPLPVSTIRAEARAVPENLQ 62 R + A+ VVG++++ A+ V LR A A VS + A L+ Sbjct: 31 RTRKFALIVVGVLLIGAAI--VIGLRFAKATELAEVSKQQATRYVSVTSPRSSATDNVLR 88 Query: 63 VVASLQAVREVQLAPDTSGRVTAIHFESGQTVKQGGLLVELYDAPE-------------Q 109 + +LQ + E + T+G VT + G VK+G LL + D PE Q Sbjct: 89 LPGTLQGIIEAPINARTNGYVTRWVKDIGDPVKRGDLLA-VIDTPEVAQQLNEAKATQAQ 147 Query: 110 ADRAAAVAKADFAQLQLRRSRELSPAGAESRELLEQRQADA------DQAVAAVRQLDAR 163 A +AK+ F + R R+ ++L E+R A A + + A V++L + Sbjct: 148 ATTNLQLAKSTFERWDALRKRD----AVSQQDLDEKRNALAVAVAADNSSKATVQRLQDQ 203 Query: 164 IEQKNIRAPFSGQIGIRHVNPGQYLNAGDA---IATLTQADPLYVNFQLPQQDLSRLTVG 220 + I APF G + R+++ G +++G + + TL ++DPL V +PQ +++ G Sbjct: 204 LGYSRIVAPFDGIVTRRNIDIGTLVDSGGSTRVLFTLAKSDPLRVYVYVPQSYSTQIKAG 263 Query: 221 ASVQVSVDAVPGRVFTGKISSIEPRIDGETRNVAVQAILPNADRLLKSGMYATARLDLP- 279 +V ++++ +PG+VF GKI+ ID TR + V LPN D +L G YA + Sbjct: 264 NTVGITLNEIPGKVFDGKIARTAGAIDTVTRTLQVAIDLPNPDGVLLPGAYAQVAIKASG 323 Query: 280 AVEDGIVLPLTAIQTSASGDSVVLVRGADAQGIGKAVAVPVVTGQRLNEEVLVTQGVKAG 339 + +P + G V +V G D GK PVV + L ++ + GV A Sbjct: 324 GSASSLTIPNNTLLFRPEGPRVAVV-GDD----GKVRLQPVVIARELGVDIELASGVTAQ 378 Query: 340 DIVVMAGQNRLPPGAVVKINAPAA 363 D +++ + L G V + P A Sbjct: 379 DKLIINPADSLSNGDAVSVITPPA 402 >gi|152981804|ref|YP_001354023.1| membrane fusion protein [Janthinobacterium sp. Marseille] Length = 377 Score = 84.0 bits (206), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 96/346 (27%), Positives = 160/346 (46%), Gaps = 34/346 (9%) Query: 47 VSTIRAEARAVPENLQVVASLQAVREVQLAPDTSGRVTAIHFESGQTVKQGGLLVELYDA 106 V T+ A + +P + + AV V + P V IH + GQ VK G LL L + Sbjct: 41 VKTVIATQKTIPITVNANGYVTAVSTVDVRPKVQNIVRTIHVKEGQFVKAGQLLFTLDER 100 Query: 107 PEQADRAAAVAKADFAQLQ-------LRRSRELSPAGAESRELLE--QRQADADQAV--- 154 +Q++ A A A+ AQ + L+R+++L S+ +++ + + DA + Sbjct: 101 SDQSNVAKASAELAAAQAELADAEQILKRNQDLLAKNFVSQAVVDTARNKVDALRNTTRA 160 Query: 155 --AAVRQLDARIEQKNIRAPFSGQIGIRHVNPGQYLN-AGDAIATLTQADPLYVNFQLPQ 211 AA++ + I+A SG+IG+ +V+PG G + T+ Q DP+ ++F LP+ Sbjct: 161 NQAAIQSSSVALSDNQIKAGISGRIGVINVHPGSLAQPTGTVMVTIVQIDPIMISFTLPE 220 Query: 212 QDLSRLTV-----GASVQVSVDAVPGR-VFTGKISSIEPRIDGETRNVAVQAILPNADRL 265 ++L+ + A V +PG+ V TGK++ I+ D ++ + ++A NA++ Sbjct: 221 RELANIRATYPQGNAPVHAQ---LPGQEVLTGKLTFIDNLADTQSGTIRMKAEFANAEQK 277 Query: 266 LKSGMYATARLDLPAVEDGIVLPLTAIQTSASGDSVVLVRGADAQGIGKAVAVPVVTGQR 325 L G Y + V D +++P A+ T V +V+ D K + + GQ Sbjct: 278 LWPGSYINVSMVSREVPDAVLVPAQAVVTGPVDKLVYVVQPDDTVKEEKISVLAIEGGQ- 336 Query: 326 LNEEVLVTQGVKAGDIVVMAGQNRLPPGAV---VKINAPAA-AAPT 367 GVKAG VV+ G L PG VK PA APT Sbjct: 337 -----AAVSGVKAGSRVVVEGTKNLRPGTKIREVKKEVPATPVAPT 377 >gi|152981697|ref|YP_001353374.1| HlyD family secretion protein [Janthinobacterium sp. Marseille] Length = 457 Score = 68.9 bits (167), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 81/343 (23%), Positives = 161/343 (46%), Gaps = 43/343 (12%) Query: 46 PVSTIRAEARAVPENLQVVASLQAVREVQLAPDTSGRVTAIHFESGQTVKQGGLLVELYD 105 PVS A + + + + S+ A + SG + I+F+ GQ V+ G LL ++ Sbjct: 70 PVSVQEARRQDIRVTVNAIGSINAANTAVVRVQVSGVLQQINFKEGQQVQAGQLLAQIDP 129 Query: 106 APEQADRAAA-------VAKADFAQLQLRRSRELSPAGAESRELLEQRQADADQAVAAVR 158 QA A A+ D A++ L R ++L S++ + ++Q D +A+ VR Sbjct: 130 RAFQATLGQAEGVLARDKAQLDNARIDLARYKDLL-----SKDAIPKQQLDTQEAL--VR 182 Query: 159 QLDARIEQKN--------------IRAPFSGQIGIRHVNPGQYLNAGDA--IATLTQADP 202 QL+ ++ + AP +G++G++ + G + D + +TQ P Sbjct: 183 QLEGTVKSDQGTVDSAKLQLSYTRVTAPIAGRVGLKQSDLGNVVQPADTNGVVIITQTRP 242 Query: 203 LYVNFQLPQQDLSRLT--VGASVQVSVDAV----PGRVFTGKISSIEPRIDGETRNVAVQ 256 + + F +P ++ +T + A+ V+V+A ++ TG++++++ ID T + V+ Sbjct: 243 IALVFSVPSANVPAITARLRANETVAVEAWDRTGKTKLATGQVATVDNAIDVTTDTIKVK 302 Query: 257 AILPNADRLLKSGMYATARLDLPAVEDGIVLPLTAIQTSASGDSVVLVRGADAQGIGKAV 316 A+ PN D L + + L ++D + +P A+ + G V +V AD+ V Sbjct: 303 ALFPNLDDALFPNQAVSVVMQLNLLKDVLTVPQAAVLRGSQGFYVYVV-NADS-----TV 356 Query: 317 AVPVVTGQRLNEEVLVTQG-VKAGDIVVMAGQNRLPPGAVVKI 358 + VV ++ + + ++AG+ VV+ G +RL G V++ Sbjct: 357 STRVVKPGAIDSGWMAIEAKLEAGEKVVIDGTDRLREGGKVEV 399 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.131 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 747,601 Number of extensions: 28557 Number of successful extensions: 166 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 134 Number of HSP's successfully gapped: 15 Length of query: 371 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 286 Effective length of database: 906,776 Effective search space: 259337936 Effective search space used: 259337936 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)