BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4330.p (484 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux prot... 173 2e-44 gi|152981001|ref|YP_001354628.1| drug efflux lipoprotein [Janthi... 159 2e-40 gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-li... 152 3e-38 gi|152983076|ref|YP_001352716.1| outer membrane protein [Janthin... 151 1e-37 gi|152981337|ref|YP_001351975.1| outer membrane protein, tolC-li... 140 2e-34 >gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux protein [Janthinobacterium sp. Marseille] Length = 485 Score = 173 bits (439), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 142/423 (33%), Positives = 214/423 (50%), Gaps = 29/423 (6%) Query: 74 WWKLYNDPALDQLVQEALTANTNLRVTLANLDRARAVYKEARGGLYPSSNLSISPSYGRD 133 WWK++ D L L+ EA +N NL + LA + ARA+ G + + + G Sbjct: 66 WWKVFGDEQLSNLIVEAGNSNLNLAIALARVKDARAIA----GVVDADRGVQVDAGVG-- 119 Query: 134 QTTWTGTGQ-APTQLSYNGGIDISYEVDLFGRVKRDIEAARDDTEAVAAAHDAAKVVVVA 192 T +G Q A TQ Y + +YEVDLFGR+ AAR D E AA+ + + + + Sbjct: 120 -PTRSGNAQGASTQ--YRAPLSFAYEVDLFGRLSDASRAARLDAEGQEAAYRSVLLALQS 176 Query: 193 DTTKAYLDACTYGESIEVAQSSIELAQRSLDLIRRQEHAGAASLLDVERAGVTLAQAQAA 252 D + Y + ++V + ++ L Q +LDL +R+ AG S LDV +A A A Sbjct: 177 DVAQQYFTIRSLDSEVDVLEKTVALRQEALDLTQRRFDAGDTSELDVAQAKTEWATTSAE 236 Query: 253 LPPLQNQKEAALFELAALLGRTPSQV-----PTSARACTKAPEVAGALPIGEGTALLRRR 307 L ++ Q+ LA LLG+ P++ P +A T +P G + LL RR Sbjct: 237 LEGVKRQRAQRDHALAILLGKAPAEFTLPVAPLAAAVVT--------VPSGLPSDLLERR 288 Query: 308 PDLRQAERQLAADTARIGVAVADLYPRVTLGASASY----LRNDFLNGNRTWSFS--LGP 361 PD+ QA+RQLAA +ARIG A A +P++ L SA Y LR+ F +R+W +G Sbjct: 289 PDIAQAQRQLAASSARIGAAKAAFFPKLLLTGSAGYESNELRDLFKWSSRSWMLGPVVGT 348 Query: 362 LISWSFPNTMVVRSRIVQAKAQAAASLASFDGVVLNALKESEQSLSAYGAAMQQRQALIQ 421 ++S + +S + +A A A +A++ VL ++ E +LSA +Q Q Q Sbjct: 349 ILSMPLFDGGRNQSNLARADANYEALVANYRLQVLVGFQDVEDNLSALRTLDRQLQFEEQ 408 Query: 422 ARDRADKAFQLAGQRYRAGSISYLDVIVAQSSLVDARSQVAAADQRLNSAQVSVFKALGG 481 A + A A +LA RYR GS SY +VI AQ S + ++ + + A V + +ALGG Sbjct: 409 AVNSAQLASRLADTRYRYGSASYFEVIDAQRSSLSSQRSKIRSTGQRAVASVGLIRALGG 468 Query: 482 GWE 484 GWE Sbjct: 469 GWE 471 >gi|152981001|ref|YP_001354628.1| drug efflux lipoprotein [Janthinobacterium sp. Marseille] Length = 481 Score = 159 bits (403), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 130/453 (28%), Positives = 228/453 (50%), Gaps = 12/453 (2%) Query: 36 TGCASGPDYHLPASPRVAVGTFVSKPANTDTAAPLPAHWWKLYNDPALDQLVQEALTANT 95 + C+ P Y P +P VA V A+ + + W + DP L L+ A+ N Sbjct: 15 SACSMAPKYVRPDAP-VAADYGVPSKADNNQVRAVDIGWRNFFTDPRLQVLIGNAIANNR 73 Query: 96 NLRVTLANLDRARAVYKEARGGLYPSSNLSISPSYGRDQTTWTGTGQAPTQLSYNGGIDI 155 +LRV ++ ARA+Y L P+ N++ + S R + + TG + +Y G+ + Sbjct: 74 DLRVAALRIEEARALYNIQSADLLPTLNVNATGSRARVPASISNTGSSVVSSNYQVGLGL 133 Query: 156 S-YEVDLFGRVKRDIEAARDDTEAVAAAHDAAKVVVVADTTKAYLDACTYGESIEVAQSS 214 + +E+D FGRV+ +AA + A AA++ +V++ KAYL ++ E ++A+ + Sbjct: 134 AAFELDFFGRVRSLSDAALAAYLSTEEAQRAAQISLVSEVAKAYLSERSFAEQQDLARQT 193 Query: 215 IELAQRSLDLIRRQEHAGAASLLDVERAGVTLAQAQAALPPLQNQKEAALFELAALLGRT 274 E + L +++ GA+S LD+ L A+AA Q Q+ A+ L L+G+ Sbjct: 194 YESRVEAYKLSKQRFEVGASSALDLRNDEALLQTARAAELLAQRQRAQAMNALTLLVGQP 253 Query: 275 PSQVPTSARACTKAPEVAGALPIGEGTALLRRRPDLRQAERQLAADTARIGVAVADLYPR 334 + +P + ++ + +P G + LL +RPD+R AE+ L + A IG A A +PR Sbjct: 254 LTDLPPAQALSSQT--ILTDIPAGLPSDLLTQRPDIRSAEQTLLSANANIGAARAAFFPR 311 Query: 335 VT----LGASASYLRNDFLNGNRTWSFSLGPLISWSFPNTMVVRSRIVQAKAQAAASLAS 390 ++ LG S++ L F G+R+WSF+ P + + R + A+ + ++A+ Sbjct: 312 ISLTAGLGTSSNELAGLFEGGSRSWSFA--PQLVLPIFDAGRNRGNLNLAEVRKDIAVAN 369 Query: 391 FDGVVLNALKESEQSLSAYGAAMQQRQALIQARDRADKAFQLAGQRYRAGSISYLDVIVA 450 ++ + A +E +L A QQ +A ++ + F+ A QR++ G S LDV+ A Sbjct: 370 YEKSIQVAFREVSDALVARDLLDQQVEAQRLVQEAQAERFKFATQRFQNGIASSLDVLDA 429 Query: 451 QSSLVDAR-SQVAAADQRLNSAQVSVFKALGGG 482 Q L A+ S V RL +A V ++++LGGG Sbjct: 430 QRELFTAQLSLVQVRLTRLTNA-VDLYRSLGGG 461 >gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-like [Janthinobacterium sp. Marseille] Length = 475 Score = 152 bits (385), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 144/486 (29%), Positives = 231/486 (47%), Gaps = 37/486 (7%) Query: 17 SPFISRRVALIVIVTAIANTGCASGPDYHLPASP-----RVAVGTFVSKPANTDTAAPLP 71 +P + +AL+++ GCA GPDY P +P + G S P + + L Sbjct: 6 TPAFASLLALLIL------GGCAVGPDYQRPDAPVAQAWKTEAGWQASNPRDGE----LK 55 Query: 72 AHWWKLYNDPALDQLVQEALTANTNLRVTLANLDRARAVYKEARGGLYPSSNLSISPSYG 131 WW+++ D L+ L ++AL + + A +D+ARA A +P + Sbjct: 56 GAWWEIFRDAELNALQEQALKNGQTMVIAQARVDQARAQANVANSSFFPKIGAQAGSARN 115 Query: 132 RDQ-----TTWTGTGQAPTQLSYNGGIDISYEVDLFGRVKRDIEAARDDTEAVAAAHDAA 186 R T + + Q +N +SYE+DLFGRV+R E A + A + Sbjct: 116 RTSAERPLTNYNSQNSSVVQNDFNAAFTVSYELDLFGRVRRQAEGAGATAQQAQADFENT 175 Query: 187 KVVVVADTTKAYLDACTYGESIEVAQSSIELAQRSLDLIRRQEHAGAASLLDVERAGVTL 246 ++V+ A+ YL I+V Q ++ ++LD I + GAAS LD+ + Sbjct: 176 RLVLTAELAADYLVLRQTDAEIDVLQQTLGAQTKALDFISARHELGAASGLDLNQQQGLT 235 Query: 247 AQAQAALPPLQNQKEAALFELAALLGRTPS---QVPTSARACTKAPEVAGALPIGEGTAL 303 A Q L LQ+Q+ +A L+G P+ ++P + A T AP A+P+ AL Sbjct: 236 AATQTQLTLLQDQRARYQNAIATLVG-VPAPDFKLPVNL-AVTTAP----AIPLTAPAAL 289 Query: 304 LRRRPDLRQAERQLAADTARIGVAVADLYPRVTL----GASASYLRNDFLNGNRTWSFSL 359 L RRPD+ AER +AA A+IGVA + +P + L G+ A+ L N F W S+ Sbjct: 290 LERRPDIAAAERAMAAANAQIGVARSAYFPSLGLSGLYGSDANQLSNLFSAPALLW--SI 347 Query: 360 GPLISWSFPNTMVVRSRIVQAKAQAAASLASFDGVVLNALKESEQSLSAYGAAMQQRQAL 419 G + + + + AKA +L ++ VL A++E + L++ A Q + Sbjct: 348 GVSATQMIFDGGRTSANVDFAKAGYQQALGNYRQSVLVAMQEVQDGLNSDVALAQALTSA 407 Query: 420 IQARDRADKAFQLAGQRYRAGSISYLDVIVAQSSLVD-ARSQVAAADQRLNSAQVSVFKA 478 A D AD++ L+ RY++G + L+V+VAQ + + R +V QRL + V + KA Sbjct: 408 KVAADSADRSLGLSTDRYQSGITTNLEVVVAQQTFLSYKRQEVQLHGQRLVNT-VKLIKA 466 Query: 479 LGGGWE 484 LGGGW Sbjct: 467 LGGGWH 472 >gi|152983076|ref|YP_001352716.1| outer membrane protein [Janthinobacterium sp. Marseille] Length = 476 Score = 151 bits (381), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 131/462 (28%), Positives = 221/462 (47%), Gaps = 21/462 (4%) Query: 36 TGCASGPDYHLPASP--RVAVGTFVSKPANTDTAAPLPAHWWKLYNDPALDQLVQEALTA 93 GC+ P Y P P + ++ N+ W + + D L Q++Q AL Sbjct: 23 VGCSLAPVYERPDLPVSKTWPDQRLANERNSPDVTASEIDWKEFFIDQNLSQVIQIALNN 82 Query: 94 NTNLRVTLANLDRARAVYKEARGGLYPSSNLSISPSYGRDQTTWTGTGQAPTQLSYNGGI 153 N +LRV N+DRARA+Y PS + S + R G + +Y+ GI Sbjct: 83 NRDLRVAALNIDRARALYGVQGADRLPSVGVGTSGARQRTPADLNDKGFSDVTSTYSAGI 142 Query: 154 DI-SYEVDLFGRVKRDIEAARDDTEAVAAAHDAAKVVVVADTTKAYLDACTYGESIEVAQ 212 I S+E+D FGR+K +AA + A A +A++ ++++ Y ++A Sbjct: 143 GITSFELDFFGRIKNLSQAALERYIATDEARRSAQIALISEVAMRYQALAADHRLWQLAN 202 Query: 213 SSIELAQRSLDLIRRQE---HAGAASLLDVERAGVTLAQAQAALPPLQNQKEAALFELAA 269 +++ LD RQ+ GA+S LD+ ++ L A+ AL Q+ L Sbjct: 203 NTLST---RLDSHARQQSLLEQGASSELDLRQSESLLEAARVALAQQTRQRAVDQNALRL 259 Query: 270 LLGRT--PSQVPTSARACTKAPEVAGALPIGEGTALLRRRPDLRQAERQLAADTARIGVA 327 L+G T PS +P+ P + +P+G + L+ RPD+RQ E L ++ A IG A Sbjct: 260 LVGATIDPSLLPSGM--SDALPAMLADIPVGLPSDLISTRPDIRQHEAILRSENASIGAA 317 Query: 328 VADLYPRVTL----GASASYLRNDFLNGNRTWSFSLGPLISWSFPNTMVVRSRIVQAKAQ 383 A +PR++L G S+S L F G+R+WSF P +S + R+ + AKA Sbjct: 318 RAAFFPRISLTGSLGTSSSELSGLFEAGSRSWSFL--PQVSLPIFDVGRNRANLNVAKAD 375 Query: 384 AAASLASFDGVVLNALKESEQSLSAYGAAMQQRQALIQARDRADKA-FQLAGQRYRAGSI 442 ++A ++ + A +E +L+ ++ +A A++RA++ + L+ QRY +G Sbjct: 376 RDIAIAEYEKSIQIAFREVADALAGTDTLKEELRAST-AQERAERVRYVLSKQRYESGYA 434 Query: 443 SYLDVIVAQSSLVDARSQVAAADQRLNSAQVSVFKALGGGWE 484 SYL+ + AQ SL + + + ++ ++KALGGGW+ Sbjct: 435 SYLEFLDAQRSLFAIQQKTIVTELAEMQNKIGLYKALGGGWK 476 >gi|152981337|ref|YP_001351975.1| outer membrane protein, tolC-like [Janthinobacterium sp. Marseille] Length = 530 Score = 140 bits (353), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 138/493 (27%), Positives = 212/493 (43%), Gaps = 51/493 (10%) Query: 37 GCASGPDYHLPA-SPRVAVGTFVSKPANTDTAAP------------LPAHWWKLYNDPAL 83 GCA GPDY P +P A A T + A WWKL+ P L Sbjct: 20 GCAVGPDYKRPELTPSKAFSPTPLPTATTTAPVSGGNAQRFVLTQDIQADWWKLFRSPQL 79 Query: 84 DQLVQEALTANTNLRVTLANLDRARAVYKEARGGLYPSSNLSISPSYGRDQTTWTGT--- 140 + L+++A AN + A L A+ +G +P+ ++ +P+ + G Sbjct: 80 NALIEKAFAANPTIESAQAALRVAQENVYAQQGFFFPTVSVGYTPARTKIAGNLGGNSPG 139 Query: 141 -------------------GQAPTQ--LSYN---GGIDISYEVDLFGRVKRDIEAARDDT 176 G+AP + YN + + + D+FG +R +E Sbjct: 140 VQGNGTVISTVANPSAAEGGKAPFNAPVIYNFHTTQLTVGFTPDVFGANRRQVETLEAQA 199 Query: 177 EAVAAAHDAAKVVVVADTTKAYLDACTYGESIEVAQSSIELAQRSLDLIRRQEHAGAASL 236 + +AA + + ++ T A + E I + QS I ++S++++ RQ AG AS Sbjct: 200 KYQQLQLEAAYITLASNVTAAAIQEALLREQISIVQSIIASNEKSVEIVERQFKAGYASR 259 Query: 237 LDVERAGVTLAQAQAALPPLQNQKEAALFELAALLG-RTPSQVPTSAR-ACTKAPEVAGA 294 LD+ TL QA+ LPPLQ Q E L AL G S +P S A + PE Sbjct: 260 LDLSLQQTTLLQAKEQLPPLQKQFEQTRNLLRALAGGMQDSDLPESFDLASLQLPE---D 316 Query: 295 LPIGEGTALLRRRPDLRQAERQLAADTARIGVAVADLYPRV----TLGASASYLRNDFLN 350 LP+ + L+ +RPD+R AE QL A +A+IGVA+A+ P+ T G +AS F N Sbjct: 317 LPLSLPSQLIDQRPDVRAAEEQLHAASAQIGVALANRLPQFSIDGTWGGAASKFSQMFWN 376 Query: 351 GNRTWSFSLGPLISWSFPNTMVVRSRIVQAKAQAAASLASFDGVVLNALKESEQSLSAYG 410 R F L IS + V+R R A+ + A + V+ A + +L A Sbjct: 377 SGRF--FELAANISMPLLDGGVLRHRQRAAEESYKQAAAQYKETVITAFQNVADTLHAIH 434 Query: 411 AAMQQRQALIQARDRADKAFQLAGQRYRAGSISYLDVIVAQSSLVDARSQVAAADQRLNS 470 A + +A + D A L +++ G I + +I A+ A VA A Sbjct: 435 ADAEALKASAELADTAKTTLTLTQKQHARGYIDRVVLINAEQGYRQAALNVAQARAMRLG 494 Query: 471 AQVSVFKALGGGW 483 ++F+ALGGGW Sbjct: 495 DTAALFQALGGGW 507 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.128 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 933,068 Number of extensions: 35018 Number of successful extensions: 212 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 165 Number of HSP's successfully gapped: 12 Length of query: 484 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 397 Effective length of database: 899,382 Effective search space: 357054654 Effective search space used: 357054654 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)