BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4328.p (284 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980647|ref|YP_001352738.1| AraC family transcriptional reg... 258 3e-70 gi|152982248|ref|YP_001354010.1| AraC family transcriptional reg... 188 3e-49 gi|152982202|ref|YP_001353604.1| AraC family transcriptional reg... 140 6e-35 gi|152982321|ref|YP_001353346.1| AraC family transcriptional reg... 125 4e-30 >gi|152980647|ref|YP_001352738.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 259 Score = 258 bits (659), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 120/250 (48%), Positives = 167/250 (66%), Gaps = 1/250 (0%) Query: 15 DVDGVSRPVLALSATSVAKDWENARHQHRKAQLIYSVRGILNCEIEEGVWIVPPQCAVWI 74 + D + +P +AL + + E+ H HRK QL+ ++ G + CE+ G+W+VPPQC VWI Sbjct: 11 NADRLFQPAVALRIDTEGSESESPIHMHRKGQLVVALHGGVTCEVPGGLWMVPPQCGVWI 70 Query: 75 PGDLPHAARGAGETECYCLFVEPDAAPDLPKTCCTISVSPLLRELILKVAGFAELYPLGG 134 PG +PH+ R LFVEP AA LP C T++++PL+RE+IL +A + YP G Sbjct: 71 PGGMPHSNRATANARLCFLFVEPGAA-SLPGECATLALTPLIREMILHLADLPQHYPPDG 129 Query: 135 REDRLIAALLDELATAPVEDLHLPMPRDLRLRRLAEMILADPSDKTSKADWAMRIGMSER 194 +L+ LL EL P E LHLP+ RLR++A + P D+++ A+W R MSER Sbjct: 130 HTAKLVEVLLSELVMMPTEQLHLPVSDHARLRQIASALTQHPDDRSTVAEWGERFAMSER 189 Query: 195 SMSRLLLQEIGMSFGRWRRQLHVILALQRLTKGESVQSVALELGYENASGFITMFRKATG 254 +++RL+L E GM+FGRWRRQLH+I+ALQRL G SVQ V+ +LGY++ S FITMF+KA G Sbjct: 190 TLARLVLNETGMTFGRWRRQLHLIIALQRLASGASVQRVSEDLGYDSVSAFITMFKKALG 249 Query: 255 KSPARYLSDR 264 KSPARY SD+ Sbjct: 250 KSPARYFSDK 259 >gi|152982248|ref|YP_001354010.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 263 Score = 188 bits (478), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 97/260 (37%), Positives = 146/260 (56%), Gaps = 9/260 (3%) Query: 14 KDVDGVSRPVLALSATSVAKDWENAR----HQHRKAQLIYSVRGILNCEIEEGVWIVPPQ 69 +D + RP A +A+D N HQH + QLIY+ G + E G W+VPPQ Sbjct: 9 EDYQHIERP-----AGGMARDLANHHLIDYHQHPRGQLIYAYSGAILVMTELGSWVVPPQ 63 Query: 70 CAVWIPGDLPHAARGAGETECYCLFVEPDAAPDLPKTCCTISVSPLLRELILKVAGFAEL 129 AVW+P + H+ + G E ++V PD P CC +SV PLLRELI + Sbjct: 64 RAVWVPPGMMHSMQACGNVEMRTVYVRPDHIPPELTGCCVVSVPPLLRELIAAMVHIPLH 123 Query: 130 YPLGGREDRLIAALLDELATAPVEDLHLPMPRDLRLRRLAEMILADPSDKTSKADWAMRI 189 Y GR+ L+ LL E+ V LHLPMP D RL ++ + IL +PSD+T+ +W+ I Sbjct: 124 YDEAGRDGLLVQLLLHEIKPLQVVRLHLPMPSDPRLAKICQRILNEPSDETTVDEWSKFI 183 Query: 190 GMSERSMSRLLLQEIGMSFGRWRRQLHVILALQRLTKGESVQSVALELGYENASGFITMF 249 G S R++ RL ++ G++F +W++Q ++ A+Q L ++V +AL+LGYE+ S F MF Sbjct: 184 GASARTIVRLFPEQTGLTFSQWKQQARLLAAIQMLATNKNVTDIALQLGYESPSAFSAMF 243 Query: 250 RKATGKSPARYLSDRTSGAE 269 ++A G +P Y + +E Sbjct: 244 KRAIGLTPTEYFRELFPASE 263 >gi|152982202|ref|YP_001353604.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 255 Score = 140 bits (354), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 90/238 (37%), Positives = 140/238 (58%), Gaps = 4/238 (1%) Query: 28 ATSVAKDWENAR----HQHRKAQLIYSVRGILNCEIEEGVWIVPPQCAVWIPGDLPHAAR 83 A ++A D+ + H+H AQL+Y++ G+L E ++G W+VPP VW+ D+ H Sbjct: 17 AAALAIDYPHGHVIPPHRHAYAQLLYALEGVLTVETQDGRWVVPPTRGVWLQPDVDHQVS 76 Query: 84 GAGETECYCLFVEPDAAPDLPKTCCTISVSPLLRELILKVAGFAELYPLGGREDRLIAAL 143 G+ + +FV P P+LP+ C + + LLRELI+ +G R+ L+ L Sbjct: 77 MRGDVKMRTVFVNPTFLPNLPQQSCVLDIPLLLRELIVSAISITPELQVGSRDWHLLHLL 136 Query: 144 LDELATAPVEDLHLPMPRDLRLRRLAEMILADPSDKTSKADWAMRIGMSERSMSRLLLQE 203 + EL + PV L+LP+P D RLR + + +A P ++ S A+ A +G+S R+ RL L+E Sbjct: 137 VLELRSVPVLPLYLPLPADSRLREICQQTMAYPDEQNSVAEQAAILGISTRTFHRLFLRE 196 Query: 204 IGMSFGRWRRQLHVILALQRLTKGESVQSVALELGYENASGFITMFRKATGKSPARYL 261 GM +G WR+Q ++LAL+RL +G+ V VALE GY + S F MF+K SP+R+ Sbjct: 197 TGMRYGHWRQQARLLLALERLARGDKVIDVALEHGYSSQSAFAAMFKKHFDISPSRFF 254 >gi|152982321|ref|YP_001353346.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 249 Score = 125 bits (313), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 81/240 (33%), Positives = 132/240 (55%), Gaps = 19/240 (7%) Query: 40 HQHRKAQLIYSVRGILNCEIEEGVWIVPPQCAVWIPGDLPHAARGAGETECYCLFVEPD- 98 H HR+AQL+++ G++ +G W+VPP AVW+P + HA + E L ++P+ Sbjct: 17 HVHREAQLLFASSGVMQVTTPKGHWLVPPARAVWLPPGIEHAVDMLADIEMRALLIQPEQ 76 Query: 99 -----AAPDLPKTCCTISVSPLLRELILKVAGFAELYPLGGREDRLIAALLDELATAPVE 153 AAP L ++ +V PLLRE IL A A+ +P + +A LL+ VE Sbjct: 77 LAQHPAAPRL-QSEFVATVGPLLRETILG-AFKADSHP------QRLALLLELALFELVE 128 Query: 154 D----LHLPMPRDLRLRRLAEMILADPSDKTSKADWAMRIGMSERSMSRLLLQEIGMSFG 209 D +PMP D R RR+A+MILADP++ + A G S R+++RL E ++F Sbjct: 129 DEDARTFMPMPHDARARRVADMILADPANGSELELLAYSAGASARTITRLFPAETNLTFK 188 Query: 210 RWRRQLHVILALQRLTKGE-SVQSVALELGYENASGFITMFRKATGKSPARYLSDRTSGA 268 WR++ ++ A++ L G+ S++ +AL+LG+ + + F FR+ G +P+ + S A Sbjct: 189 EWRQRARIMAAVEALGNGQTSIKQLALQLGFSSVASFGHAFRQIMGMTPSEMMRRSESAA 248 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.135 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 636,275 Number of extensions: 23409 Number of successful extensions: 88 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 85 Number of HSP's successfully gapped: 4 Length of query: 284 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 202 Effective length of database: 917,867 Effective search space: 185409134 Effective search space used: 185409134 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)