BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4326.p (483 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrog... 451 e-128 gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde deh... 197 9e-52 gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogen... 157 2e-39 >gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrogenase (NADP+) [Janthinobacterium sp. Marseille] Length = 490 Score = 451 bits (1159), Expect = e-128, Method: Compositional matrix adjust. Identities = 227/469 (48%), Positives = 317/469 (67%), Gaps = 4/469 (0%) Query: 14 YIGGQWREASDGARFDVLDPATEELLTEVASGSIADALDAVGAAYQAGPAWAATSPRQRS 73 YI G W + A FDV +PA +T+V + + A+ AA+ A PAWAA + ++R+ Sbjct: 20 YINGAW--VTGKASFDVNNPADGSKITDVPNLGAQETEQAIQAAHAAFPAWAAKTGKERA 77 Query: 74 DILRKAFDLLIERKEAFARLIVLESGKALAEARGEVAYAAEFLRWYSEEAVRIQGEVSVA 133 I+R FDL+I + A L+ E GK L E+RGEV Y A F+ W++EEA R+ G+V + Sbjct: 78 GIMRIWFDLIIANADDLAALMTAEQGKPLIESRGEVIYGASFIEWFAEEAKRVSGDVMAS 137 Query: 134 PGGANRILVVRQPIGVAVFVTPWNFPAAMATRKIGPALAAGCTVVLKPASETPLTALAMA 193 R + ++QPIGV +TPWNFP AM TRK+ PA+AAGCT+V+KPA +TPL+ALA+A Sbjct: 138 TWSDKRTVTIKQPIGVCASITPWNFPIAMITRKVAPAIAAGCTIVIKPAEQTPLSALAIA 197 Query: 194 EVFEEAGVPAGVINVVPSRKSGEIV--KAMLEDPRVRKLSFTGSTEIGRVLLGQAAQNVV 251 E+ AG+P GVINVV S I K + P VR +SFTGST +GR+L+ Q A V Sbjct: 198 ELAHRAGIPPGVINVVTSDSDQSIAVGKVLCSSPIVRHVSFTGSTPVGRILMEQCAPTVK 257 Query: 252 KCSMELGGNAPFIVLADADLEVAVASAMVAKLRNGGESCTAANRFYVERPVAEEFSRRFA 311 K +ELGG+APFIV DADL+ AV A+ +K RN G++C NRFYV + + F ++ Sbjct: 258 KIGLELGGHAPFIVFDDADLDAAVVGALQSKYRNAGQTCVCTNRFYVHESIYDTFVQKLG 317 Query: 312 QAMAAVKIGSGLEEGIQLGPLVNSSTLQKVHQLVTEAVEQGAKVLTGGKIREGKGYFYEP 371 A +K+G+G+E+G+ GPL+++ ++KV Q V++AV +GAKV+TGGK GYFYEP Sbjct: 318 AGAAKIKVGNGVEQGVLQGPLIDAQAVKKVEQHVSDAVSKGAKVITGGKQHALGGYFYEP 377 Query: 372 TLLTDVRADATILHREIFGPVAPICIFDSIDEVIRLANDTEFGLVSFVHSKDLGKALQVA 431 T+L+++ D I+H E FGPVA + F + DE + ANDT+FGL S+ +S+D+G+ +VA Sbjct: 378 TVLSNISPDMLIMHEETFGPVAAVIKFKTEDEAVAAANDTDFGLASYFYSRDIGRVWRVA 437 Query: 432 ERIEAGMVGINRGVVSDPAAPFGGWKQSGVGREGGHDGLLEYLESKYIC 480 E++E GMVGIN G++S+ APFGG KQSG+GREG G+ EYLE KY+C Sbjct: 438 EKLEYGMVGINTGLISNEVAPFGGVKQSGLGREGSKYGIEEYLEIKYLC 486 >gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde dehydrogenase [Janthinobacterium sp. Marseille] Length = 505 Score = 197 bits (502), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 153/488 (31%), Positives = 237/488 (48%), Gaps = 14/488 (2%) Query: 8 TAQTGLYIGGQWREASDGARFDVLDPATEELLTEVASGSIADALDAVGAAYQAGPAWAAT 67 +A+ YI G+ E + G + DV +PAT E +V S AD V A A PAWA T Sbjct: 4 SAKIKHYINGRLTETAGGRQQDVFNPATGEASAQVVLASDADVQAVVATAKAAAPAWADT 63 Query: 68 SPRQRSDILRKAFDLLIERKEAFARLIVLESGKALAEARGEVAYAAEFLRWYSEEAVRIQ 127 +P +R+ IL K DL+ + + A I E GK ++A+GEV E + + ++ Sbjct: 64 APLKRARILFKFKDLIEKHHDDLAAAITREHGKVFSDAKGEVTRGLEVVEFACGVPQLLK 123 Query: 128 GEVSVAPGGANRILVVRQPIGVAVFVTPWNFPAAMATRKIGPALAAGCTVVLKPASETPL 187 + + GG +RQP+GV +TP+NFP + ALA G T +LKP+ P Sbjct: 124 TQFTDNIGGGIDNWNLRQPLGVTAGITPFNFPFMVPMWMAPVALATGNTFILKPSERDPS 183 Query: 188 TALAMAEVFEEAGVPAGVINVVPSRKSGEIVKAMLEDPRVRKLSFTGSTEIGRVLLGQAA 247 +L +AE+ ++AG+P GV NV+ K V +L+ P V+ +SF GST I + A Sbjct: 184 PSLMVAELLQQAGLPDGVFNVLQGDKLA--VDGLLQHPDVKAVSFVGSTPIAEYIYATGA 241 Query: 248 QNV-----VKCSMELGGNAPFIVLADADLEVAVASAMVAKLRNGGESCTAANRFYVERPV 302 ++ G +V+ DA+LE AV + + A + GE C A + + Sbjct: 242 ARKGGSYPLRVQALGGAKNHLVVMPDANLEQAVDALIGAAYGSAGERCMAISVAVAVGDI 301 Query: 303 AEEFSRRFAQAMAAVKIGSGLEEGIQLGPLVNSSTLQKVHQLVTEAVEQGAKVLTGGK-- 360 A++ + ++K+ +G+E ++GP+V+++ K+ + V+ GAK+L G+ Sbjct: 302 ADKLVAALIPRVKSLKVKNGMEADAEMGPVVSAAHKAKIEGYIDAGVKAGAKLLVDGRGL 361 Query: 361 --IREGKGYFYEPTLLTDVRADATILHREIFGPVAPICIFDSIDEVIRLANDTEFGLVSF 418 KG+F L V + TI EIFGPV + + + L N EFG Sbjct: 362 KVAGHDKGFFLGGCLFDHVTPEMTIYQEEIFGPVLCVLRVPNFAAALELINRHEFGNGVS 421 Query: 419 VHSKDLGKALQVAERIEAGMVGINRGV-VSDPAAPFGGWKQSGVG--REGGHDGLLEYLE 475 + + D A + + R+E GMVGIN + V FGGWK+S G G +G+ Y Sbjct: 422 LFTSDGNTAREFSRRVEVGMVGINVPIPVPMAWHSFGGWKRSMFGDTHAYGEEGIKFYTR 481 Query: 476 SKYICASW 483 K I W Sbjct: 482 YKSIMQRW 489 >gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase [Janthinobacterium sp. Marseille] Length = 1242 Score = 157 bits (396), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 139/488 (28%), Positives = 223/488 (45%), Gaps = 47/488 (9%) Query: 14 YIGGQWREASD-----GARFDVLDPATEELLTEVASGSIADALD-AVGAAYQAGPAWAAT 67 Y QWR A A +V +PA + + A L+ A+ A W A Sbjct: 581 YTRWQWRAAPSCTQVSSACIEVRNPANHADVVGTVQQADAAVLELALQHATSGINTWQAK 640 Query: 68 SPRQRSDILRKAFDLLIERKEAFARLIVLESGKALAEARGEVAYAAEFLRWYSEEAVRIQ 127 +R+ IL +A DL + L+V E+GK L A GE+ A +FLR+YS +A+ Sbjct: 641 PIAERAAILLQAADLFQQHATELIALLVREAGKTLPNAIGELREAIDFLRYYSAQAI--- 697 Query: 128 GEVSVAPGGANRILVVRQPIGVAVFVTPWNFPAAMATRKIGPALAAGCTVVLKPASETPL 187 AN QP+G+ ++PWNFP ++ T ++ ALAA V+ KPA +TPL Sbjct: 698 ------ASDAN------QPLGLVACISPWNFPLSIFTGQVSAALAAANVVLAKPAEQTPL 745 Query: 188 TALAMAEVFEEAGVPAGVINVVPSRKSGEIVKAML-EDPRVRKLSFTGSTEIGRVLLGQA 246 A ++ +AGVP + +P SGE + A L DPRV + FTGST++ + + + Sbjct: 746 IACRAVQLLHQAGVPENALLFLPG--SGETIGAQLVTDPRVSAVVFTGSTQVAQSIQRKL 803 Query: 247 AQNVVK------CSMELGGNAPFIVLADADLEVAVASAMVAKLRNGGESCTAANRFYVER 300 Q + E GG IV + A E V + + + G+ C+A ++ Sbjct: 804 VQRSISEGKDIPLIAETGGQNTMIVDSSALCEQVVRDVISSAFDSAGQRCSALRVLCLQD 863 Query: 301 PVAEEFSRRFAQAMAAVKIGSGLEEGIQLGPLVNSSTLQKVHQLVTEAVEQGAKVLTGGK 360 +AE+ + AM ++IG +GP++++ + + +A Q A G + Sbjct: 864 DIAEQTLQMLHGAMQELRIGRPDHLATDVGPVIDAEAQAHLQAYIRQA--QAA----GKQ 917 Query: 361 IRE-----GKGYFYEPTLLTDVRADATILHREIFGPVAPICIF--DSIDEVIRLANDTEF 413 +R+ G F P ++ AD L RE+FGPV + + D + +++ N T F Sbjct: 918 VRQLPLPVTNGSFVAPCIIE--IADINELQREVFGPVLHVLRYRRDDLPQLLMDINSTGF 975 Query: 414 GLVSFVHSKDLGKALQVAERIEAGMVGINRGVVSDPAA--PFGGWKQSGVGREGGHDGLL 471 GL +H++ V + G + +NR +V PFGG SG G + G L Sbjct: 976 GLTLGIHTRIDETIDYVVRHAQVGNIYVNRNIVGAVVGVQPFGGEGLSGTGPKAGGPLYL 1035 Query: 472 EYLESKYI 479 + L+ + I Sbjct: 1036 KRLQRESI 1043 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,075,544 Number of extensions: 44307 Number of successful extensions: 169 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 157 Number of HSP's successfully gapped: 3 Length of query: 483 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 396 Effective length of database: 899,382 Effective search space: 356155272 Effective search space used: 356155272 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)