BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4324.p (301 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 79 5e-16 gi|152981653|ref|YP_001353379.1| LysR family transcriptional reg... 67 1e-12 gi|152980807|ref|YP_001354140.1| transcriptional regulator CysB-... 63 2e-11 gi|152981664|ref|YP_001352876.1| LysR family transcriptional reg... 59 3e-10 gi|152982810|ref|YP_001352193.1| LysR family transcriptional reg... 58 7e-10 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 78.6 bits (192), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 136/287 (47%), Gaps = 9/287 (3%) Query: 14 FAKVAELGSLTQAANAVNGPQSVISRQIGQLEKQCGAKLFRRTGRGVVLTEFGEI--VYS 71 F A+ S T+A+ +++ Q +S QI Q+E + G +LF R GR V LT GE+ VY+ Sbjct: 9 FLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTAGELFQVYA 68 Query: 72 RIRPLMEVADRLADDILTSNNIPIGEVHVGLLPTTVPMFAGRLFKAVQEQFPRVRLHLVE 131 + R L+EV D D + N+ G V G+L + + + +P +++ ++ Sbjct: 69 K-RALLEV-DAGLDALNELENLKHGRVTFGVLSSFGTFHLPPILADFNKVYPGIKITVLR 126 Query: 132 GSSAQLEEWLDCGRLDMALLLREGMVDSKDEPCLLTTALDLIGWRDAPLLTSGRICFDSL 191 S ++EE L G L + + + L T L L+ PL+ S I + L Sbjct: 127 LRSGEIEERLLDGDLHFGVAYAPSSTEQINVEPLFTVPLALVVGDHHPLVGSAGITLNEL 186 Query: 192 QDVSLILPAEPHVLRRRLDILARERGVRLNVSVEADTIQLQREIAAAGIGYAIVAAVSGA 251 + L++ ++ + R+ +D + G+ + +E + I E A + ++ +A + A Sbjct: 187 NEHELVMLSDEYNSRKMMDAILLANGITPRIVMEMNAI----EPILATVRHSSLATILSA 242 Query: 252 DDQDDRLGKARI-VEPELMRSIVLGTTRHRPYTLATRSLHQLIRALF 297 + D+ G ++ + P + ++ L T R+ + A R+L IR F Sbjct: 243 NLVDEMPGLHQVPLTPTVTHTVGLFTRRNSHLSAAARALVDTIRQRF 289 >gi|152981653|ref|YP_001353379.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 285 Score = 67.0 bits (162), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 2/138 (1%) Query: 14 FAKVAELGSLTQAANAVNGPQSVISRQIGQLEKQCGAKLFRRTGRGVVLTEFGEIVYSRI 73 F V + GS T+AA++V+ QS +S+QI +LE+Q L R+GR V T GE + Sbjct: 10 FVAVVDTGSFTRAADSVHLTQSTVSQQIRRLEEQFDCDLLNRSGRYVATTPEGESLLGYA 69 Query: 74 RPLMEVADRLADDILTSNNIPIGEVHVGLLPTTVPMFAGRLFKAVQEQFPRVRLHLVEGS 133 R ++++ D + + + ++ GE+ +G+ + A +P +RL + G Sbjct: 70 RRILQLMDEAVEQV--TQSVEQGEIQLGVPEDFAAHALTPVLAAFAGNYPGIRLEITSGL 127 Query: 134 SAQLEEWLDCGRLDMALL 151 S L G+LD+AL+ Sbjct: 128 SHDLYRMFQQGKLDLALV 145 >gi|152980807|ref|YP_001354140.1| transcriptional regulator CysB-like protein [Janthinobacterium sp. Marseille] Length = 313 Score = 63.2 bits (152), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/246 (23%), Positives = 114/246 (46%), Gaps = 16/246 (6%) Query: 22 SLTQAANAVNGPQSVISRQIGQLEKQCGAKLFRRTGRGVV-LTEFGEIVYSRIRPLMEVA 80 +LT+AA A+ Q +S+ I +LE++ G +F R G+ + LTE G V + +M+ Sbjct: 18 NLTEAAKALFTSQPGVSKAIIELEEELGVDIFSRHGKRIRGLTEPGRAVLKSVELIMQEI 77 Query: 81 D---RLADDILTSNNIPIGEVHVGLLPTTVPMFAGRLFKAVQEQFPRVRLHLVEGSSAQL 137 D R+ ++ ++ G + T ++ +A ++FP+VRL L++G+ Q+ Sbjct: 78 DGLKRIGNEFAAHDS---GSFTIATTHTQARYSLPKVVQAFTQKFPKVRLSLLQGNPKQV 134 Query: 138 EEWLDCGRLDMALLLR-----EGMVDSKDEPCLLTTALDLIGWRDAPLLTSGRICFDSLQ 192 + + + D+A+ EG++ PC ++ D PLL S I + L Sbjct: 135 ADMVLMDQADLAIATESIASIEGLISL---PC-YQWEHQVVVPVDHPLLKSKSITLEELT 190 Query: 193 DVSLILPAEPHVLRRRLDILARERGVRLNVSVEADTIQLQREIAAAGIGYAIVAAVSGAD 252 LI R ++D R ++ ++ +EA + + G+G I+A ++ Sbjct: 191 AYPLITYDSAFAGRNKIDHAFALRNLKPDILLEAIDADVIKTYVELGMGIGIIAGMAFDA 250 Query: 253 DQDDRL 258 ++D L Sbjct: 251 ERDKNL 256 >gi|152981664|ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 59.3 bits (142), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 77/147 (52%), Gaps = 2/147 (1%) Query: 7 LDARWL-LFAKVAELGSLTQAANAVNGPQSVISRQIGQLEKQCGAKLFRRTGRGVVLTEF 65 +D R L F VAE G LT+AA + Q +S+QI LEK+ G LFRR RG+ LTE Sbjct: 4 IDLRLLRYFVIVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMELTES 63 Query: 66 GEIVYSRIRPLMEVADRLADDILTSNNIPIGEVHVGLLPT-TVPMFAGRLFKAVQEQFPR 124 G+ + R ++E + + + + G + VG + + F + +A +++ P Sbjct: 64 GQALLIDARLILEQVNTTIEGVRRISLGESGRLAVGFTESAALHPFIPAVIRAFRQKSPG 123 Query: 125 VRLHLVEGSSAQLEEWLDCGRLDMALL 151 V + + E ++ +L E L RLD+A + Sbjct: 124 VIMAVEESNTNELVEDLRHNRLDVAFI 150 >gi|152982810|ref|YP_001352193.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 294 Score = 58.2 bits (139), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 77/163 (47%), Gaps = 11/163 (6%) Query: 14 FAKVAELGSLTQAANAVNGPQSVISRQIGQLEKQCGAKLFRRTGRGVVLTEFGEIVYSRI 73 F AE GS++ AA + QS +S I LE G +LF R+ R V LT GE++ Sbjct: 11 FVVTAEAGSISAAARRLGKAQSAVSTAIALLEADLGFELFDRSRRSVQLTPAGEVMLLEA 70 Query: 74 RPLMEVADRLADDILTSNNIPIGEVHVGL-LPTTVPMFA-GRLFKAVQEQFPRVRLHLVE 131 R L+ A+ L D + + + L L +P A G L K + ++FP + L + Sbjct: 71 RELLRQAEGL--DHRAQSFAAGQQPKLTLALDEALPYLAVGALVKEISQRFPSLELSQLN 128 Query: 132 GSSAQLEEWLDCGRLDMALLLREGMVDSKDEPCLLTTALDLIG 174 G++ ++ E+++ R +A G PC L+ A IG Sbjct: 129 GTATEVAEYVEKQRASVAFHFDRG-------PCSLSFAQKHIG 164 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.138 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 628,385 Number of extensions: 23897 Number of successful extensions: 95 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 97 Number of HSP's successfully gapped: 10 Length of query: 301 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 218 Effective length of database: 914,170 Effective search space: 199289060 Effective search space used: 199289060 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)