BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4322.p (304 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982855|ref|YP_001355260.1| LysR family transcriptional reg... 144 6e-36 gi|152982346|ref|YP_001355337.1| LysR family transcriptional reg... 125 3e-30 gi|152982787|ref|YP_001352203.1| LysR family transcriptional reg... 95 5e-21 >gi|152982855|ref|YP_001355260.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 144 bits (364), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 92/304 (30%), Positives = 160/304 (52%), Gaps = 6/304 (1%) Query: 1 MRFNKLDLNLLVALDALLTEMSISRAAEKMNLSQSAMSNALARLRDYFDDELLVLVGRRL 60 M +DLNLLVA DA++ E +++ AA ++ +SQ AMSNALARLR F+D L V + + Sbjct: 1 MNIASVDLNLLVAFDAIVKERNVTSAAVRLGVSQPAMSNALARLRIIFNDPLFVRTSQGM 60 Query: 61 EPTPRAEILKDAVHDVLRRIEGSIEAKPAFVPAESHREFRISVSDFTLTVLIPHVLARAR 120 +PTP AE L + V I +++ F PA + + F +++ +L+P +L + Sbjct: 61 QPTPYAEQLIEPVSRACELITSALQINSVFDPATTTKTFSFYMTEIGEILLLPKLLKHIQ 120 Query: 121 AEAPH--IRFALLPQVQDPTHALDRAEVDLLVMPKDFCTPDHPSEELFTERYVCAVWRES 178 AP+ +R +P+ Q A+ E+DL V + + L+T+++ C V + Sbjct: 121 VAAPNACVRVRRIPE-QGAKEAMANGEIDLAVGLFPYLKAGFYQQRLYTDKFACIVRQGH 179 Query: 179 ELAQGELSLERYMNAGHV-VMVPPGPHSTSLEARMTAQLGFVRRVEVTSFNFSAMLALVQ 237 L+ ++Y++ HV VM H ++E + + R++ +TS NF + +++ Sbjct: 180 PTVHDSLTPQQYVDTPHVIVMSANTGHDAAIEKILLTE-HLRRKIVMTSQNFLVLPMIIE 238 Query: 238 GTDRIATIFSRLARMLAS-CFPVELRDSPLPLGEMHQTMQWHRYRTNDPGIEWLRALFLK 296 TD IATI R+A+ +AS +++ +SP+P + WH DP +W+R L + Sbjct: 239 QTDAIATIPFRMAQKIASYSTGIKILESPIPFPNVDIKQHWHERFHYDPANKWMRDLMVT 298 Query: 297 SAKE 300 +E Sbjct: 299 LFRE 302 >gi|152982346|ref|YP_001355337.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 319 Score = 125 bits (314), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 91/312 (29%), Positives = 152/312 (48%), Gaps = 14/312 (4%) Query: 1 MRFNKLDLNLLVALDALLTEMSISRAAEKMNLSQSAMSNALARLRDYFDDELLVLVGRRL 60 M F LDLNLL DA++TE +++RAA + ++Q A+SNAL RLRD DEL++ + Sbjct: 1 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLGDELVIRTAHGV 60 Query: 61 EPTPRAEILKDAVHDVLRRIEGSIEAKPAFVPAESHREFRISVSDFTLTVLIPHVLARAR 120 +PT RAE L V L +E ++ F + ++ FR++++D T + +P ++ Sbjct: 61 KPTSRAEELWPVVRRALSDLEAAVTPD-TFDVSRANTTFRMAMADATAALWLPFLVRAIE 119 Query: 121 AEAPHIRFALLP-QVQDPTHALDRAEVDL-----------LVMPKDFCTPDHPSEELFTE 168 +AP + ++P ++P L R ++DL L ++ E L+T Sbjct: 120 KDAPGLNVRMVPLTTREPRPMLLRGDIDLAIGFFPGVAAQLASGQNTAVSQIRHERLYTG 179 Query: 169 RYVCAVWRESELAQGELSLERYMNAGHVVMVPPGPHSTSLEARMTAQLGFVRRVEVTSFN 228 YVC + + LA+ EL+L+ Y A H+++ G ++ +T LG RR+ +T Sbjct: 180 EYVCVMRKNHPLAKVELTLDNYCAAHHLLVSFSGRAKGLMDEALT-NLGRERRILLTVNQ 238 Query: 229 FSAMLALVQGTDRIATIFSRLARMLASCFPVELRDSPLPLGEMHQTMQWHRYRTNDPGIE 288 F +V +D I + L + +D P L ++H M WH +P + Sbjct: 239 FFTAGRVVASSDLITVLPRHLIASTGMAEALIAKDLPFELPDVHVDMLWHERDARNPAHK 298 Query: 289 WLRALFLKSAKE 300 WLR S +E Sbjct: 299 WLREQLSASTEE 310 >gi|152982787|ref|YP_001352203.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 311 Score = 95.1 bits (235), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 85/305 (27%), Positives = 136/305 (44%), Gaps = 12/305 (3%) Query: 4 NKLDLNLLVALDALLTEMSISRAAEKMNLSQSAMSNALARLRDYFDDELLVLVGRRLEPT 63 + LD++L+ L LL E ++SR A K+N Q ++S +L +LR+ D LLV R + PT Sbjct: 6 DHLDIHLIRILYLLLCEKNVSRVALKLNRPQPSISASLRKLRELTGDPLLVRGARGMVPT 65 Query: 64 PRAEILKDAVHDVLRRIEGSIEAKPAFVPAESHREFRISVSDFTLTVLIPHVLARARAEA 123 E L + +L E K AFVP + R F I+ D+ T V+AR R E+ Sbjct: 66 QHGESLMKSAKRILDEAEHLFIPKTAFVPQDEARTFHIAAPDYMNTQFFTEVIARLRRES 125 Query: 124 P--HIRFALLPQVQDPTHALDRAEVDLLVMPKDFCTPDH-PSEELFTERYVCAVWRESEL 180 P HI L D L E+DL++ D P+H +LF + VC + + Sbjct: 126 PKSHIVIHALGPDTDYVRLLSDGELDLVIANWDE-MPEHLHMSKLFDDPIVCLMRSDCAY 184 Query: 181 ----AQGELSLERYMNAGHVV--MVPPGPHSTSLEARMTAQLGFVRRVEVTSFNFSAMLA 234 A+ +++E Y++ H + PG H T ++ + Q R + V S +F + Sbjct: 185 AKRTAKDAMTIEDYLSLPHAAPSQILPGYHGT-IDTFLEKQ-NLRRNIVVESAHFRMLPY 242 Query: 235 LVQGTDRIATIFSRLARMLASCFPVELRDSPLPLGEMHQTMQWHRYRTNDPGIEWLRALF 294 +V+ TD + T + ++ P+ + WH +WLRA Sbjct: 243 MVEKTDLVLTAGQQFTSFYEKTLSLKSYTVPIKFPPLRFYQLWHERVHQATEHKWLRAQV 302 Query: 295 LKSAK 299 +AK Sbjct: 303 CAAAK 307 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 631,261 Number of extensions: 24093 Number of successful extensions: 91 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 85 Number of HSP's successfully gapped: 3 Length of query: 304 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 221 Effective length of database: 914,170 Effective search space: 202031570 Effective search space used: 202031570 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)