BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4320.p (310 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981488|ref|YP_001352078.1| LysR family transcriptional reg... 87 9e-19 gi|152980807|ref|YP_001354140.1| transcriptional regulator CysB-... 80 1e-16 gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 75 5e-15 gi|152981632|ref|YP_001352505.1| cys regulon transcriptional act... 74 2e-14 gi|152982492|ref|YP_001352911.1| LysR family transcriptional reg... 73 2e-14 >gi|152981488|ref|YP_001352078.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 326 Score = 87.4 bits (215), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 84/313 (26%), Positives = 142/313 (45%), Gaps = 22/313 (7%) Query: 5 LQQLEMFCAIVGAGSLGRAANVLGLTQPALSRAIKRLEETVGGTLFERHTTGMHLTQLGQ 64 L+QL++F + S RAA L LTQPA+S +K+LEE G LFE+ ++LT G Sbjct: 6 LRQLKVFETVARHLSFSRAAEELHLTQPAVSTQVKKLEEHAGLALFEQLGKKIYLTPGGS 65 Query: 65 ALLPHALSLQREAKQARDELDALRGLSKGVIKVGAVGSIASLVLPLAVAGVLAKWP---- 120 LL ++ ++ ++ ++A D + +G++ G + V AV S P + Sbjct: 66 ELLHYSRTIIQQFQEAEDAMTQFKGITGGKLNV-AVISAGDYFFPRLLVEFARSHQGVTL 124 Query: 121 NLRVEIIEGVWDRLAEGLLTHEIDLALGT---SGMETDGVAAIADCCWNDLSYVVAGNDH 177 NL V EG+ +++ L D+A+ + M+T I + +VA DH Sbjct: 125 NLSVHNREGLLNQMTSNL----TDIAIMVRPPTDMDT-----INEAFAPHPYVIVAAPDH 175 Query: 178 PLRGKDKISLAETLEQRWVLTPAGTGPYLHLKETFAKAGLPMPEIAVESRSVTVLKSLVA 237 PL + I ++ +++ +V+ G+ + +++ F + +A+E RS +K V Sbjct: 176 PLVSQKNIPMSRLMQEPFVVREKGSDTWHSMEDGFGDR-INDINVAMEIRSTETIKQAVI 234 Query: 238 RCGFVGWMSGPMFDTERKAGLIDALPVEGLNAPRTLMAFRRRQGILPTPA----TRLLDE 293 V ++S E +AG + L VEG R+ LP A LLDE Sbjct: 235 AGMGVSFLSAHTISLELQAGSLAVLDVEGFPVMLNWYIVHRKNKRLPPVAQAFKNFLLDE 294 Query: 294 LRNLAGSLQSFSP 306 L L ++P Sbjct: 295 GPELIERLIRYNP 307 >gi|152980807|ref|YP_001354140.1| transcriptional regulator CysB-like protein [Janthinobacterium sp. Marseille] Length = 313 Score = 80.5 bits (197), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 117/258 (45%), Gaps = 6/258 (2%) Query: 4 NLQQLEMFC-AIVGAGSLGRAANVLGLTQPALSRAIKRLEETVGGTLFERHTTGMH-LTQ 61 NL QL A+ +L AA L +QP +S+AI LEE +G +F RH + LT+ Sbjct: 2 NLHQLRFVREAVRQNFNLTEAAKALFTSQPGVSKAIIELEEELGVDIFSRHGKRIRGLTE 61 Query: 62 LGQALLPHALSLQREAKQARDELDALRGLSKGVIKVGAVGSIASLVLPLAVAGVLAKWPN 121 G+A+L + +E + + G + + A LP V K+P Sbjct: 62 PGRAVLKSVELIMQEIDGLKRIGNEFAAHDSGSFTIATTHTQARYSLPKVVQAFTQKFPK 121 Query: 122 LRVEIIEGVWDRLAEGLLTHEIDLALGTSGMET-DGVAAIADCCWNDLSYVVAGNDHPLR 180 +R+ +++G ++A+ +L + DLA+ T + + +G+ ++ C+ VV DHPL Sbjct: 122 VRLSLLQGNPKQVADMVLMDQADLAIATESIASIEGLISLP--CYQWEHQVVVPVDHPLL 179 Query: 181 GKDKISLAETLEQRWVLTPAGTGPYLHLKETFAKAGLPMPEIAVESRSVTVLKSLVARCG 240 I+L E + + + FA L P+I +E+ V+K+ V Sbjct: 180 KSKSITLEELTAYPLITYDSAFAGRNKIDHAFALRNLK-PDILLEAIDADVIKTYVELGM 238 Query: 241 FVGWMSGPMFDTERKAGL 258 +G ++G FD ER L Sbjct: 239 GIGIIAGMAFDAERDKNL 256 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 75.1 bits (183), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 72/299 (24%), Positives = 122/299 (40%), Gaps = 21/299 (7%) Query: 5 LQQLEMFCAIVGAGSLGRAANVLGLTQPALSRAIKRLEETVGGTLFERHTTGMHLTQLGQ 64 L+ L F A + S RA+ L +TQP LS IK++E+ +G LF+R + LT G+ Sbjct: 3 LRHLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTAGE 62 Query: 65 ALLPHALSLQREAKQARDELDALRGLSKGVIKVGAVGSIASLVLPLAVAGVLAKWPNLRV 124 +A E D L+ L L G + G + S + LP +A +P +++ Sbjct: 63 LFQVYAKRALLEVDAGLDALNELENLKHGRVTFGVLSSFGTFHLPPILADFNKVYPGIKI 122 Query: 125 EIIEGVWDRLAEGLLTHEIDLALGTSGMETDGVAAIADCCWNDLSYVVAGNDHPLRGKDK 184 ++ + E LL ++ + + T+ + + + +V G+ HPL G Sbjct: 123 TVLRLRSGEIEERLLDGDLHFGVAYAPSSTEQIN--VEPLFTVPLALVVGDHHPLVGSAG 180 Query: 185 ISLAETLEQRWVLTPAGTGPYLHLKETFAKAGLPMPEIAVESRSVTVLKSLVARCGFVGW 244 I+L E E V+ + G+ P I +E ++ + + V Sbjct: 181 ITLNELNEHELVMLSDEYNSRKMMDAILLANGI-TPRIVMEMNAIEPILATVRHSSLATI 239 Query: 245 MSGPMFDTERKAGLIDALPVEGLN-------APRTLMAFRRRQGILPTPATRLLDELRN 296 +S A L+D +P GL+ T+ F RR L A L+D +R Sbjct: 240 LS---------ANLVDEMP--GLHQVPLTPTVTHTVGLFTRRNSHLSAAARALVDTIRQ 287 >gi|152981632|ref|YP_001352505.1| cys regulon transcriptional activator [Janthinobacterium sp. Marseille] Length = 308 Score = 73.6 bits (179), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 77/290 (26%), Positives = 127/290 (43%), Gaps = 30/290 (10%) Query: 4 NLQQLEMFCAIVGAG-SLGRAANVLGLTQPALSRAIKRLEETVGGTLFERH--------T 54 N QQL G +L ANVL +QP +SR I+ LEE +G +FER+ Sbjct: 2 NFQQLRSIRETARCGYNLTEVANVLFTSQPGVSRQIRELEEELGVDIFERNGKRLTGLTD 61 Query: 55 TGMHLTQLGQALLPHALSLQREAKQARDELDALRGLSKGVIKVGAVGSIASLVLPLAVAG 114 G + Q+ LL A +LQR +++ G G + V + A +LP V Sbjct: 62 PGRGILQIIDRLLLEAENLQRASQE-------YAGQEIGTLAVATTHTQARYMLPKVVQV 114 Query: 115 VLAKWPNLRVEIIEGVWDRLAEGLLTHEIDLALGTSGMETDGVAAIADC----CWNDLSY 170 ++P +R+ + + + +AE +L+ + D+ G+ T+G++ D C+ Sbjct: 115 FRKEFPKVRIALQQSTPEHIAEWVLSGKADI-----GIATEGLSQFEDLVSFPCYRWHHS 169 Query: 171 VVAGNDHPLRGKDKISLAETLEQRWVLTPAGTGPYLHLKETFAKAGLPMPEIAVESRSVT 230 VV + HPL K I+LA+ + + G H+ E F +A + +I + + Sbjct: 170 VVVPDGHPLLEKKLITLADLAQYSLITYDLGFTGRGHIDEAFKQADIT-TDIVLTAMDSD 228 Query: 231 VLKSLVARCGFVGWMSGPMFDTERKAGL--IDALPVEGLNAPRTLMAFRR 278 V++ V VG ++ GL IDA + N R +A RR Sbjct: 229 VIQQYVLLNLGVGIVASMALQQNGSNGLKVIDASHLFAQNVTR--LAVRR 276 >gi|152982492|ref|YP_001352911.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 72.8 bits (177), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 112/233 (48%), Gaps = 17/233 (7%) Query: 1 LSFNLQQLEMFCAIVGAGSLGRAANVLGLTQPALSRAIKRLEETVGGTLFERHTTGMHLT 60 ++ L+QL F + G AA +LG++Q +LS ++ LE +G LF+RHT + LT Sbjct: 1 MNITLRQLRAFVTVAETGKFTLAAELLGVSQSSLSLLVRDLENLLGLRLFDRHTRRLELT 60 Query: 61 QLGQALLPHA----LSLQREAKQARDELDALRGLSKGVIKVGAVGSIASLVLPLAVAGVL 116 G LLP A + L + +RD L L KG + + A A+ V+P + Sbjct: 61 DAGHDLLPVAQKTLMDLLSVVENSRD----LLALKKGRVTIAAGSLHAATVIPDLLKSFN 116 Query: 117 AKWPNLRVEIIEGVWDR-LAEGLLTHEIDLALGTSGMETDG-VAAIADCCWNDLSYVVAG 174 ++P +RV I+E V +R + E ++ +D+ + GM DG + +A D V+ Sbjct: 117 RRYPGIRV-IVEDVAERQVRELIVAGTVDVGI---GMTLDGDNSMLAQVIGRDKYAVLMH 172 Query: 175 NDHPLRGKDKISLAETLEQRWVLTPAGTGPYLHLKETFAKAGL---PMPEIAV 224 +H L K I+ + + +L + +L + A+ G+ P E+A+ Sbjct: 173 KEHQLMRKKTITWQDIAATQPILLKPPSLIRTYLDQHLARVGITLTPAYEVAL 225 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 726,685 Number of extensions: 30225 Number of successful extensions: 165 Number of sequences better than 1.0e-08: 27 Number of HSP's gapped: 159 Number of HSP's successfully gapped: 27 Length of query: 310 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 227 Effective length of database: 914,170 Effective search space: 207516590 Effective search space used: 207516590 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)