BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4319.p (532 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980052|ref|YP_001353840.1| acetolactate synthase large sub... 112 6e-26 gi|152980239|ref|YP_001352089.1| putative oxalyl-CoA decarboxyla... 69 9e-13 gi|152981070|ref|YP_001352069.1| glyoxylate carboligase [Janthin... 68 1e-12 >gi|152980052|ref|YP_001353840.1| acetolactate synthase large subunit [Janthinobacterium sp. Marseille] Length = 583 Score = 112 bits (279), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 136/539 (25%), Positives = 221/539 (41%), Gaps = 60/539 (11%) Query: 27 VFANPGSTELPMFRDF--PADFRYVLGLQEAVVVGMADGYAQASGKAALVNLHSAAGVGN 84 VF PG L ++ + F+++L E V AD Y+++S K + + S GV N Sbjct: 35 VFGYPGGAVLYIYDAIFNHSKFQHILVRHEQAAVHAADAYSRSSNKIGVCLVTSGPGVTN 94 Query: 85 AMGNIFTAFRNRTPLIITAGQQARSILPFDPFLAASHATELPKPYVKWSIEPARAADVPR 144 A+ + TA+ + P+I+ +GQ + D F + +P VK + D+ Sbjct: 95 AVTGLATAYMDSIPMIVISGQVPSHAIGLDAFQECD-TVGITRPCVKHNFLVKDVKDLAA 153 Query: 145 ALARAYHIAMQEPRGPVFVSIPVDDWDQPGELLEATEVTTRSRPEPDA-----IAALATA 199 + +A+ IA GPV + IP D EV RS D I Sbjct: 154 TMKKAFFIATTGRPGPVLIDIPKDITMHKCVFEYPKEVEMRSYKPVDKGHSGQIRKAVQL 213 Query: 200 LHRSERPAIVVGSELDRAGAWDEVLRLAEVSNARVFVAPMSSRCSFPEDHHLFA-GFLPA 258 L ++ERP I G + A A +E+ RL + R +P + L G A Sbjct: 214 LLQAERPMIYTGGGVILANASEELNRLVD-------------RLGYPCTNTLMGLGAYKA 260 Query: 259 MREKIVQL--LNG---------HDLIFVAGAPAFTYHVEGSGPHLPSGAQLYQLID-DPV 306 +K V + ++G H + +A F V G+ H + + ID DP Sbjct: 261 SSDKFVGMPGMHGTYEANMAMQHSDVMIAIGARFDDRVIGNPKHFSATPRKIIHIDIDPS 320 Query: 307 TASW-TPSGTAIVGNIQLGLQDLLAQLLKHPPAARPLPPARAA--------RPR-----A 352 + S IVGN++ L +LLAQL A+P A +A R R Sbjct: 321 SISKRVKVDIPIVGNVKEVLVELLAQL--DAADAKPNSVALSAWWKQINEWRKRDCLKFT 378 Query: 353 EPETPMSAAFAMQTLAEVRAAEDIVVEEAPGSRPTMQAYLPFTRPGTFYTMASGGL---G 409 + + +Q + EV + + + + Y PF +P + + SGGL G Sbjct: 379 DSTEVIKPQSVIQKVWEVTKGDAFITSDVGQHQMWAAQYYPFNKPRRW--INSGGLGTMG 436 Query: 410 YGMPAAVGVALARPQQRVIGLIGDGSAMYSPQAIYSAVQLRLPLTFVIINNRRYAALQDF 469 G+P A+GV A P V + G+ S Q + + Q L +++NNR ++ + Sbjct: 437 VGLPYAMGVQKANPDATVACITGEASIQMCIQELATCKQYHLTPKIILLNNRFLGMVRQW 496 Query: 470 APV-FGFGAGDVVQGTDLPGLDFVALAQSMGCQGVRVSEPGELAAALQTAISSNEPRLV 527 + +G + + LP DF L +S G G+++ P ++ AL+ A + RLV Sbjct: 497 QQLEYGSRYSESYMDS-LP--DFNKLVESYGHVGMKIENPADVDGALKEAFDMKD-RLV 551 >gi|152980239|ref|YP_001352089.1| putative oxalyl-CoA decarboxylase [Janthinobacterium sp. Marseille] Length = 570 Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 124/559 (22%), Positives = 211/559 (37%), Gaps = 58/559 (10%) Query: 8 GITVRDAVLDLMRRLDMTSVFANPGSTELP------MFRDFPADFRYVLGLQEAVVVGMA 61 G+ + D LM L+M + G +P M++ F Q A Sbjct: 11 GVELTDGFHLLMEALEMNGITNIYGLLGIPVTEIGRMWQARGNKFFSFRNEQNAGYAASV 70 Query: 62 DGYAQASGKAALVNLHSAAGVGNAMGNIFTAFRNRTPLIITAGQQARSILPFDPF-LAAS 120 GY + K + SA G N + + A N P+I+ +G R I+ Sbjct: 71 AGYL--TKKPGVCVTVSAPGFLNGLTALANATTNCFPMILISGSSEREIVDLQQGDYEEM 128 Query: 121 HATELPKPYVKWSIEPARAADVPRALARAYHIAMQEPRGPVFVSIPVDDWD-----QPGE 175 + +P+ K S R D+ A+ RA A+ G V++ IP + + G+ Sbjct: 129 DQLNIARPHCKASFRINRTEDIGVAVVRAIRTALSGRPGGVYLDIPARLFSTTMSAEEGQ 188 Query: 176 --LLEATEVTTRSRPEPDAIAALATALHRSERPAIVVGSELDRAGAWDEVLRLAEVSNAR 233 L + P P A++ + +++P I++G A ++ L E + Sbjct: 189 KSLFVPVDPAPAQLPAPSAVSRAVELIKGAKKPLILLGKGAAYAQCDADIKALIEETG-- 246 Query: 234 VFVAPMSSRCSFPEDHHLFAGFLPAMREKIVQLLNGHDLIFVAGAPAFTYHVEGSGPHLP 293 + PMS D H A R ++Q D++ + GA G G Sbjct: 247 IPFTPMSMAKGLVSDTHPQCA--AAARSMVLQ---ESDVVILIGARLNWLLAHGKGKTWG 301 Query: 294 SGAQLYQL-IDDPVTASWTPSGTAIVGNIQLGLQDLLAQLLKHPPAARPLP-----PARA 347 + Q+ I S P ++G+I+ + L A L AA+P RA Sbjct: 302 GAKKFVQIDIQANEIDSNVPIAAPLIGDIESCVNALRAGL---KGAAKPTEWMSAIAERA 358 Query: 348 ARPRAEPETPMSAAF-AMQTLAEVRAAEDI--------VVEEAPGS----RPTMQAYLPF 394 +A+ T +S A M + A D+ +V E + R + YLP Sbjct: 359 TGTKAKLATKLSTATPVMNYFNSLGAIRDVLKNYPDITLVNEGANTLDNARMVIDQYLPR 418 Query: 395 TR--PGTFYTMASGGLGYGMPAAVGVALARPQQRVIGLIGDGSAMYSPQAIYSAVQLRLP 452 R GT+ M G+G G A V +P V+ + GD + +S + + LP Sbjct: 419 KRVDTGTWGVM---GIGMGSAVAAAVETGKP---VVAICGDSAFGFSAMEYETITRYNLP 472 Query: 453 LTFVIINNRRYAALQDFAPVFGFGAGDVVQGTDLPGLDFVALAQSMGCQGVRVSEPGELA 512 +T +I+NN + P V P + + ++G +GVR P LA Sbjct: 473 VTVIIMNNGGIYRGDEANPEH-----QVSCMIFNPKTKYDQFSVALGGEGVRAETPEALA 527 Query: 513 AALQTAISSNEPRLVEVVV 531 AL+ ++ S +P +++ ++ Sbjct: 528 KALEASLKSGKPTIIDAII 546 >gi|152981070|ref|YP_001352069.1| glyoxylate carboligase [Janthinobacterium sp. Marseille] Length = 582 Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/255 (25%), Positives = 111/255 (43%), Gaps = 10/255 (3%) Query: 9 ITVRDAVLDLMRRLDMTSVFANPGSTELPMFRDFPAD--FRYVLGLQEAVVVGMADGYAQ 66 +T A + +M++ + F PG+ P + +++L MA+GY + Sbjct: 4 MTAAQAAVWVMQKEGIDQAFGVPGAAINPFYSAMQKQGTIKHILARHVEGATHMAEGYTR 63 Query: 67 A-SGKAALVNLHSAAGVGNAMGNIFTAFRNRTPLIITAGQQARSILPFDPFLAASHATEL 125 A SG + S G + + +++A + P++ GQ R+ L + F A + Sbjct: 64 AKSGNIGVALATSGPGGTDMVTGLYSAIADSIPILCVTGQAPRARLHKEDFQAVD-IESI 122 Query: 126 PKPYVKWSIEPARAADVPRALARAYHIAMQEPRGPVFVSIPVD----DWDQPGELLEATE 181 KP KWS+ A VP+ +A+HI GPV + +P D + + +L E Sbjct: 123 SKPVTKWSVMVREPALVPQVFQQAFHIMRSGRPGPVLIDLPFDVQVAEIEFDPDLYEPLP 182 Query: 182 VTTRSRPEPDAIAALATALHRSERPAIVVGSELDRAGAWDEVLRLAEVSNARVFVAPMSS 241 V AA+A L+ +ERP ++ G + A A +L AE+ N V V + Sbjct: 183 VYKPQATRKQIEAAIAM-LNAAERPLLISGGGVINANATPLMLEFAELVNVPV-VPTLMG 240 Query: 242 RCSFPEDHHLFAGFL 256 + P+DH L G + Sbjct: 241 WGTVPDDHPLMVGMV 255 Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 7/135 (5%) Query: 405 SGGLGYGMPAAVGVALARPQQRVIGLIGDGSAMYSPQAIYSAVQLRLPLTFVIINNRRYA 464 +G LG+ +PAA+GV A P ++ + GD + + + + Q LP V++NN Sbjct: 418 AGPLGWTIPAALGVRAADPTSEIVAITGDYDFQFLIEELAAGAQFNLPYIHVLVNNSYLG 477 Query: 465 ALQDFAPVFGFG-----AGDVVQGTDLP--GLDFVALAQSMGCQGVRVSEPGELAAALQT 517 ++ +F A D + T+ G+D V + + +GC+ +RV P ++A AL+ Sbjct: 478 LIRQAQRMFTMDYCVSLAFDNINSTENASYGVDHVKVTEGLGCKAIRVYNPDDIAPALKK 537 Query: 518 AISSNEPRLVEVVVR 532 A + V VVV Sbjct: 538 AQEWIKEFKVPVVVE 552 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.135 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,256,595 Number of extensions: 55048 Number of successful extensions: 188 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 183 Number of HSP's successfully gapped: 4 Length of query: 532 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 444 Effective length of database: 895,685 Effective search space: 397684140 Effective search space used: 397684140 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)