BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4318.p (483 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrog... 273 2e-74 gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde deh... 172 6e-44 gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogen... 104 1e-23 >gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrogenase (NADP+) [Janthinobacterium sp. Marseille] Length = 490 Score = 273 bits (698), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 163/460 (35%), Positives = 255/460 (55%), Gaps = 4/460 (0%) Query: 16 TGGACFERRNPLDESVASRAPAATVADAQSAVRAAAEAFPAWAAMGPGERRSLLTRAADA 75 TG A F+ NP D S + P + + A++AA AFPAWAA ER ++ D Sbjct: 27 TGKASFDVNNPADGSKITDVPNLGAQETEQAIQAAHAAFPAWAAKTGKERAGIMRIWFDL 86 Query: 76 LQARADAFAEAMASETGASHHWAAFNVHLAADGLREAAAMTTQIAGQLIPSDVPGNLAMG 135 + A AD A M +E G + V A + A +++G ++ S + Sbjct: 87 IIANADDLAALMTAEQGKPLIESRGEVIYGASFIEWFAEEAKRVSGDVMASTWSDKRTVT 146 Query: 136 VRQAAGVVLGIAPWNAPVILGVRAVALPLACGNTVIFKGSEICPATHGLIIDAFQDAGLP 195 ++Q GV I PWN P+ + R VA +A G T++ K +E P + I + AG+P Sbjct: 147 IKQPIGVCASITPWNFPIAMITRKVAPAIAAGCTIVIKPAEQTPLSALAIAELAHRAGIP 206 Query: 196 PGVVNFITNAPEDAGKIVEAIIADPAVRRVNFTGSTRVGRIIAGQCAKYLKPSVLELGGK 255 PGV+N +T+ + + + + + + P VR V+FTGST VGRI+ QCA +K LELGG Sbjct: 207 PGVINVVTSDSDQSIAVGKVLCSSPIVRHVSFTGSTPVGRILMEQCAPTVKKIGLELGGH 266 Query: 256 APFIVLHDADIEAAVQAAAFGAFANSGQICMSTERIIVDERVADDFVARLVAKARSLPLG 315 APFIV DAD++AAV A + N+GQ C+ T R V E + D FV +L A A + +G Sbjct: 267 APFIVFDDADLDAAVVGALQSKYRNAGQTCVCTNRFYVHESIYDTFVQKLGAGAAKIKVG 326 Query: 316 DPRQGPVVLGSVVDLATVQRCNALIDDALAKGARLVCGGKAES---TLMPATLLDHVTAQ 372 + + V+ G ++D V++ + DA++KGA+++ GGK + T+L +++ Sbjct: 327 NGVEQGVLQGPLIDAQAVKKVEQHVSDAVSKGAKVITGGKQHALGGYFYEPTVLSNISPD 386 Query: 373 MDIYHEESFGPVKPIVRVKDDDAAIACANDNEYGLSAALFSRDIARALNLVRRIESGICH 432 M I HEE+FGPV +++ K +D A+A AND ++GL++ +SRDI R + ++E G+ Sbjct: 387 MLIMHEETFGPVAAVIKFKTEDEAVAAANDTDFGLASYFYSRDIGRVWRVAEKLEYGMVG 446 Query: 433 INGATVHDEAHMPFGGVKSSGFGHFGGTAGVAEFTDLRWI 472 IN + +E PFGGVK SG G G G+ E+ +++++ Sbjct: 447 INTGLISNEV-APFGGVKQSGLGREGSKYGIEEYLEIKYL 485 >gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde dehydrogenase [Janthinobacterium sp. Marseille] Length = 505 Score = 172 bits (435), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 149/489 (30%), Positives = 227/489 (46%), Gaps = 28/489 (5%) Query: 3 EVDMLINGQRRSATGGACFERRNPLDESVASRAPAATVADAQSAVRAAAEAFPAWAAMGP 62 ++ ING+ GG + NP +++ A+ AD Q+ V A A PAWA P Sbjct: 6 KIKHYINGRLTETAGGRQQDVFNPATGEASAQVVLASDADVQAVVATAKAAAPAWADTAP 65 Query: 63 GERRSLLTRAADALQARADAFAEAMASETGASHHWAAFNVHLAADGLREAAAMTTQIAGQ 122 +R +L + D ++ D A A+ E G A V + + A + Q Sbjct: 66 LKRARILFKFKDLIEKHHDDLAAAITREHGKVFSDAKGEVTRGLEVVEFACGVP-----Q 120 Query: 123 LIPSDVPGNLAMGV-----RQAAGVVLGIAPWNAPVILGVRAVALPLACGNTVIFKGSEI 177 L+ + N+ G+ RQ GV GI P+N P ++ + + LA GNT I K SE Sbjct: 121 LLKTQFTDNIGGGIDNWNLRQPLGVTAGITPFNFPFMVPMWMAPVALATGNTFILKPSER 180 Query: 178 CPATHGLIIDAFQDAGLPPGVVNFITNAPEDAGKIVEAIIADPAVRRVNFTGSTRVGRII 237 P+ ++ + Q AGLP GV N + + V+ ++ P V+ V+F GST + I Sbjct: 181 DPSPSLMVAELLQQAGLPDGVFNVL----QGDKLAVDGLLQHPDVKAVSFVGSTPIAEYI 236 Query: 238 AGQCAKYLKPS----VLELGG-KAPFIVLHDADIEAAVQAAAFGAFANSGQICMSTERII 292 A S V LGG K +V+ DA++E AV A A+ ++G+ CM+ + Sbjct: 237 YATGAARKGGSYPLRVQALGGAKNHLVVMPDANLEQAVDALIGAAYGSAGERCMAISVAV 296 Query: 293 VDERVADDFVARLVAKARSLPLGDPRQGPVVLGSVVDLATVQRCNALIDDALAKGARLVC 352 +AD VA L+ + +SL + + + +G VV A + ID + GA+L+ Sbjct: 297 AVGDIADKLVAALIPRVKSLKVKNGMEADAEMGPVVSAAHKAKIEGYIDAGVKAGAKLLV 356 Query: 353 GGKA-------ESTLMPATLLDHVTAQMDIYHEESFGPVKPIVRVKDDDAAIACANDNEY 405 G+ + + L DHVT +M IY EE FGPV ++RV + AA+ N +E+ Sbjct: 357 DGRGLKVAGHDKGFFLGGCLFDHVTPEMTIYQEEIFGPVLCVLRVPNFAAALELINRHEF 416 Query: 406 GLSAALFSRDIARALNLVRRIESGICHINGATVHDEAHMPFGGVKSSGFG--HFGGTAGV 463 G +LF+ D A RR+E G+ IN A FGG K S FG H G G+ Sbjct: 417 GNGVSLFTSDGNTAREFSRRVEVGMVGINVPIPVPMAWHSFGGWKRSMFGDTHAYGEEGI 476 Query: 464 AEFTDLRWI 472 +T + I Sbjct: 477 KFYTRYKSI 485 >gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase [Janthinobacterium sp. Marseille] Length = 1242 Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 123/461 (26%), Positives = 189/461 (40%), Gaps = 46/461 (9%) Query: 14 SATGGACFERRNPLDES-VASRAPAATVADAQSAVRAAAEAFPAWAAMGPGERRSLLTRA 72 + AC E RNP + + V A A + A++ A W A ER ++L +A Sbjct: 593 TQVSSACIEVRNPANHADVVGTVQQADAAVLELALQHATSGINTWQAKPIAERAAILLQA 652 Query: 73 ADALQARADAFAEAMASETGASHHWAAFNVHLAADGLREAAAMTTQIAGQLIPSDVPGNL 132 AD Q A + E G + + A LREA + Q I SD Sbjct: 653 ADLFQQHATELIALLVREAGKT-------LPNAIGELREAIDFLRYYSAQAIASDA---- 701 Query: 133 AMGVRQAAGVVLGIAPWNAPVILGVRAVALPLACGNTVIFKGSEICPATHGLIIDAFQDA 192 Q G+V I+PWN P+ + V+ LA N V+ K +E P + A Sbjct: 702 ----NQPLGLVACISPWNFPLSIFTGQVSAALAAANVVLAKPAEQTPLIACRAVQLLHQA 757 Query: 193 GLPPGVVNFITNAPEDAGKIVEAIIADPAVRRVNFTGSTRVGRIIAGQCAKYL------K 246 G+P + F+ + E G ++ DP V V FTGST+V + I + + Sbjct: 758 GVPENALLFLPGSGETIGA---QLVTDPRVSAVVFTGSTQVAQSIQRKLVQRSISEGKDI 814 Query: 247 PSVLELGGKAPFIVLHDADIEAAVQAAAFGAFANSGQICMSTERIIVDERVADDFVARLV 306 P + E GG+ IV A E V+ AF ++GQ C + + + + +A+ + L Sbjct: 815 PLIAETGGQNTMIVDSSALCEQVVRDVISSAFDSAGQRCSALRVLCLQDDIAEQTLQMLH 874 Query: 307 AKARSLPLGDPRQGPVVLGSVVDLATVQRCNALIDDALAKGARL------VCGGKAESTL 360 + L +G P +G V+D A I A A G ++ V G S + Sbjct: 875 GAMQELRIGRPDHLATDVGPVIDAEAQAHLQAYIRQAQAAGKQVRQLPLPVTNG---SFV 931 Query: 361 MPATLLDHVTAQMDIYHEESFGPVKPIVRVKDDD--AAIACANDNEYGLSAALFSRDIAR 418 P + A ++ E FGPV ++R + DD + N +GL+ + +R Sbjct: 932 APCII---EIADINELQREVFGPVLHVLRYRRDDLPQLLMDINSTGFGLTLGIHTRIDET 988 Query: 419 ALNLVRRIESGICHIN----GATVHDEAHMPFGGVKSSGFG 455 +VR + G ++N GA V + PFGG SG G Sbjct: 989 IDYVVRHAQVGNIYVNRNIVGAVVGVQ---PFGGEGLSGTG 1026 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.134 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,011,619 Number of extensions: 40462 Number of successful extensions: 123 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 114 Number of HSP's successfully gapped: 3 Length of query: 483 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 396 Effective length of database: 899,382 Effective search space: 356155272 Effective search space used: 356155272 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)