BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4317.p
         (459 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980838|ref|YP_001354006.1| major facilitator transporter [...   144   1e-35
gi|152982698|ref|YP_001352731.1| major facilitator transporter [...   142   3e-35

>gi|152980838|ref|YP_001354006.1| major facilitator transporter
           [Janthinobacterium sp. Marseille]
          Length = 462

 Score =  144 bits (363), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 188/394 (47%), Gaps = 9/394 (2%)

Query: 18  LDEGTFTGFQKMVVILAALSIVMDGFDGQLIGFAIPSLIKEWGVTRNAFAPAVAAGLVGM 77
           L+      + + + ++ AL+   D  D  ++ + + S+  E+G+T        +A  VGM
Sbjct: 17  LERLPICNYHRFLFMVIALAFFFDNLDLAMMAYLLGSIKTEFGLTTAQAGMLGSASFVGM 76

Query: 78  GLGSAFAGLFADRFGRRLAIIGSVFVFGIATSLISLSPDITTIAILRFFAGLGIGGALPV 137
            LG+  +G+ AD+FGR+     S+ ++G+A+ L S + D  ++AI R   G+G+G  LP+
Sbjct: 77  ALGAVSSGMLADKFGRKPIFQISMIIWGVASYLCSTANDPVSLAIYRVLLGIGMGMELPL 136

Query: 138 STTITAEFSPARIRTFAVTATIVCVPLGGMLAGLFANLVLPHYGWRGLFLLGGMLPVAFS 197
           + T+ +EF PA+ R   +       P+  + AGL +  VL  Y WR +FLLG  +P  F 
Sbjct: 137 AQTLLSEFIPAKRRGKYLALMDGNWPIAFICAGLMSYYVLASYSWRTMFLLGA-IPAVFL 195

Query: 198 LLLWFCIPESPRYLARQPDRWDELRSLLTRMSRTISAGMR------FADAREQNSQPKAG 251
            ++   +PESPR+L  +  R  E  +++  +   +   ++               Q   G
Sbjct: 196 FVIRRYVPESPRWLESK-GRHAEASNIVDGIEGEVKKILKVDSLPPIVQTAMMRDQEAFG 254

Query: 252 FGALFAEGRARDTIAIWLAFFMNLLAVYSAFSWLPTMLAGEGLSPSVAANGLTAYNIGGV 311
              L++    R T+ +W  +F  LL  Y   +W+  +L   GL  + +         GG+
Sbjct: 255 IKVLWSPVYRRRTLTVWGLWFFALLGFYGLNTWIGALLQQSGLEVTKSVLYTVYIACGGI 314

Query: 312 FGALLCAVVIGRFGSRVPMLLCCLAAAGTAFALRSLDVSSQTTL-LVAGIGLHGLFVNAV 370
            G L  A V+ R+G +   +   L  A   F    +  S+ T + LV+   +   F+  +
Sbjct: 315 PGFLWAAWVVERWGRKPACVSTLLGGAVMVFIYGWVASSAHTFIALVSAGAMMQFFMFGM 374

Query: 371 QCTMYALCAYIYPTQVRATGTAGALAFGRLGAIL 404
              +Y     +YPT+ RA+G   A   GRLG++L
Sbjct: 375 WAVLYTYTPELYPTRARASGCGMASTVGRLGSLL 408


>gi|152982698|ref|YP_001352731.1| major facilitator transporter
           [Janthinobacterium sp. Marseille]
          Length = 460

 Score =  142 bits (359), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 114/437 (26%), Positives = 208/437 (47%), Gaps = 14/437 (3%)

Query: 13  DIGRVLDEGTFTGFQKMVVILAALSIVMDGFDGQLIGFAIPSLIKEWGVTRNAFAPAVAA 72
           ++   L+    T +Q+ +  + A +   D  D  ++ F + S+  E+ +T        ++
Sbjct: 12  NVAARLERLPMTRYQRSLFGIIATAWFFDSMDLGIMTFVLGSIKAEFALTTTQAGLLASS 71

Query: 73  GLVGMGLGSAFAGLFADRFGRRLAIIGSVFVFGIATSLISLSPDITTIAILRFFAGLGIG 132
             +GM LG+A AG+ AD+FGR+     S+  +G  +     + D+T + + R   G G+G
Sbjct: 72  SFLGMFLGAAIAGMLADKFGRKPVFQWSMIFWGAGSLACGFATDVTWLMVFRVVLGFGMG 131

Query: 133 GALPVSTTITAEFSPARIRTFAVTATIVCVPLGGMLAGLFANLVLPHYGWRGLFLLGGML 192
              P+  ++ +E  PA+ R   V       PLG + AG+ A L LP  GWRG+F +   +
Sbjct: 132 MEFPIGLSMVSEIVPAKSRGKYVAILEGFWPLGFIAAGILAYLTLPLIGWRGIF-IALSI 190

Query: 193 PVAFSLLLWFCIPESPRYLARQPDRWDELRSLLTRMSRTI---SAGMRF-ADAREQNSQP 248
           P  F  ++   +PESPR+L  +  R  E  ++ T++ + +   + G      A   N  P
Sbjct: 191 PAVFVFIVRRYVPESPRWL-EEVGRDAEADAVTTKIEKNVIKANGGKPLPTPAPPINEMP 249

Query: 249 K-----AGFGALFAEGRARDTIAIWLAFFMNLLAVYSAFSWLPTMLAGEGLSPSVAANGL 303
           K     A F  L+    A+ T+ +W  +F  LL  Y   +WL  +L   G   + +    
Sbjct: 250 KKQDKRALFAELWHGVYAKRTVMLWALWFFALLGYYGLTTWLGALLQQAGYEVTKSVMYT 309

Query: 304 TAYNIGGVFGALLCAVVIGRFGSRVPMLLCCLAAAGTAFALRSLDVSSQTTLLVAGIGL- 362
              ++ G+ G +  A ++ ++G +   +L  + +A  A+    +  +      + G GL 
Sbjct: 310 VYISLAGIPGFIFSAWLLEKWGRKPTCVLMLVGSACAAYVYGQVATAQAPVAQLIGAGLC 369

Query: 363 HGLFVNAVQCTMYALCAYIYPTQVRATGTAGALAFGRLGAILSAFAGAIVITQGGASGYL 422
              F+  +   +YA    +YPT+ RATG+  A + GRLG++L  FA  +++   G +G  
Sbjct: 370 MQFFLFGMWSVLYAYTPELYPTRSRATGSGFASSIGRLGSLLGPFAVGVILPMTGHTGVF 429

Query: 423 AMLGGAMLFVFVTLLMV 439
            +  GA+ F    L+++
Sbjct: 430 TL--GAISFGIAALVVI 444


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.328    0.141    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,063,027
Number of extensions: 46024
Number of successful extensions: 318
Number of sequences better than 1.0e-08: 9
Number of HSP's gapped: 311
Number of HSP's successfully gapped: 9
Length of query: 459
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 373
Effective length of database: 903,079
Effective search space: 336848467
Effective search space used: 336848467
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)