BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4316.p
         (308 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980035|ref|YP_001352083.1| 2-dehydropantoate 2-reductase [...   108   5e-25

>gi|152980035|ref|YP_001352083.1| 2-dehydropantoate 2-reductase
           [Janthinobacterium sp. Marseille]
          Length = 336

 Score =  108 bits (269), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 144/307 (46%), Gaps = 27/307 (8%)

Query: 16  GARLALNGQKVSFIEVAPATIAAISDNGLAFSDDSGTHTVRVPVGRADSFAE--PFDLIV 73
           G +LAL G+ V+FI V  A + AI  NG       G+  V   V   +++ E  P D+IV
Sbjct: 16  GVKLALAGEDVTFI-VRGANLEAIRKNGAKLIMHDGSEHVAANVKATNNYDEAGPQDIIV 74

Query: 74  FFTKSLHTQSAVRSISHLVGQDTWALSVQNGL--------------------GNAEIISE 113
              K+   ++    +  L+G +T  +++QNG+                         I+ 
Sbjct: 75  LAMKAHQLEAIADDLPKLIGPETVIVTMQNGIPFWYFHKHGGKLTGTRVESVDPTGKITA 134

Query: 114 VIPSERIIVGMTNLPADLKSAGVV-HSHGEGYVRIWTMSGKERPEVSRVAEIFSAAGLNC 172
            IP++R++  +    ++L + GV+ H  G+ +  I  + G      +RV+E F+ AG   
Sbjct: 135 KIPADRVLGCVVYPASELIAPGVIKHIEGDRF-PIGELDGSTSERATRVSECFTNAGFKS 193

Query: 173 SADPQVRAAIWEKVAFNAALNSVCAVIGCTVGTAGSTEQGRALAMRIAAETVSVAQALQI 232
                +R+ IW K+  N   N + A+   T+         R LA  +  E  ++A  L I
Sbjct: 194 PVLDNIRSEIWLKLWGNLTFNPISALSHSTLQDICQYPLSRELAAAMMTEAQTIAHKLGI 253

Query: 233 PARIAKVEEALLDAFRMHVNHKPSMLQDIEAGRQTEIDFINGAVAEQARGCGVSVPTVTA 292
             R+  +E+ +  A ++   HK SMLQD+EAGR  EID + G+VAE  R      P +  
Sbjct: 254 EFRVT-LEKRIAGAEKVG-KHKTSMLQDVEAGRDPEIDALVGSVAELGRLTETPTPHIDT 311

Query: 293 LYELVKM 299
           +Y LVK+
Sbjct: 312 VYALVKL 318


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.131    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 693,124
Number of extensions: 28172
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 225
Effective length of database: 914,170
Effective search space: 205688250
Effective search space used: 205688250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)