BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4314.p
         (296 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981830|ref|YP_001354107.1| hypothetical protein mma_2417 [...    73   2e-14

>gi|152981830|ref|YP_001354107.1| hypothetical protein mma_2417
           [Janthinobacterium sp. Marseille]
          Length = 314

 Score = 73.2 bits (178), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 95/201 (47%), Gaps = 13/201 (6%)

Query: 107 ANLSVEAG----GSSQTKTGIADVTFGPAIAN-HYSEHLHSVYGFDLVAPTGAYNKNDLA 161
           A+ S++AG    GSS + TGIAD+   P IA  H+S+  H      + AP+ +Y+   LA
Sbjct: 115 ASTSLQAGSLASGSSDSTTGIADILVTPIIAGFHFSKTEHMSLSLPIYAPSASYDPKRLA 174

Query: 162 NIGRNYWSLQPLFAMSYIDKNGFNGDFKA--TLNLNQTNSATQYRSGTEFNLDYAAGYSV 219
           N G+N W+  P  A + ++K+G  G+F A   L     N  T YR+      +      V
Sbjct: 175 NDGQNTWTFMPTIAYTRLNKDG--GEFTAMGMLQFYTKNKDTDYRNAPLLVSEALWTTRV 232

Query: 220 ARDWVAGVSGYWYRQVKDDSQNGVTVANA-RGRAFAIGPSVKYDNGRGF---ILTAKIQR 275
           A+D   GV G    Q+ DD        N  RG A  +GP + +    G      +A+   
Sbjct: 233 AKDTNLGVVGGLIYQLGDDKGALADRLNGFRGSAVGLGPIMTWSGKIGSHPGSASARAVW 292

Query: 276 EMAVRNRTEGTAIDFRASIPF 296
           ++  ++R +G +I    S+ F
Sbjct: 293 DIDTKDRPKGYSIGISLSLLF 313


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 737,792
Number of extensions: 32261
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 213
Effective length of database: 914,170
Effective search space: 194718210
Effective search space used: 194718210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)