BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4313.p (308 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981502|ref|YP_001352470.1| ABC-type branched-chain amino a... 91 6e-20 gi|152980782|ref|YP_001354237.1| ABC-type branched-chain amino a... 86 3e-18 gi|152981595|ref|YP_001351787.1| ABC-type branched-chain amino a... 72 6e-14 gi|152981369|ref|YP_001353498.1| ABC-type branched-chain amino a... 62 6e-11 >gi|152981502|ref|YP_001352470.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 346 Score = 91.3 bits (225), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 83/288 (28%), Positives = 139/288 (48%), Gaps = 32/288 (11%) Query: 3 MFVIA-LAWNLLAGFGGLIAIGQHAFIGVGAYSLFFLSNSLDCAPW-LLLPLATLSA--- 57 +FVIA ++ NLL G+ G +++G AF G+GAY+ LS D W + PL + Sbjct: 35 IFVIAAISLNLLLGYTGQLSLGHVAFFGLGAYTTSLLSLGFDVTLWGMTEPLVVTAKPVW 94 Query: 58 ------LAFALLSAWPM----FRLSGPYFAVGTWVLAEMLRIAAQNTDVLGAGSGLSLDE 107 +AFA ++ W + FR+ G YF + T A+++R+ + N L G ++L+ Sbjct: 95 VSFACGIAFAAIAGWLLGKLAFRVRGAYFVIVTISFAQVMRMVSLNWVDLTEGP-MALNN 153 Query: 108 MNNIDRWTRNAG---------SYWAALALCISAVVVARMTLRGRIGLALMSVRDSEVAAT 158 + + W G +YW LA+ + + ++ + RIG A++++R++E A Sbjct: 154 IPALTMWVPGEGVIDLASKLSTYWLVLAVAVVSYLLVAAIVHSRIGRAMIALRENETLAR 213 Query: 159 ACGVSVRKAKLWIWLIAAAMTGTAGALAYINTLQVTPDASFSLNWTAAAIFIAVLGGIGT 218 + G+ V L I I AA A Y +T+++ F +T + + ++GG GT Sbjct: 214 SVGIRVTH-YLGIATIFAAGIAGAAGGLYAHTVRIIDPDVFMFMFTIMMVIMVIVGGKGT 272 Query: 219 LEGPFLGTLLYFFLRESF----SAYGAWYFIGLGSLAIFAMLFSPGGA 262 L GP +G LL+ L E S W G+ L I ++F P G Sbjct: 273 LAGPVVGGLLFGLLPEVLRGVVSPEIQWMIYGV--LMIAVLVFMPKGV 318 >gi|152980782|ref|YP_001354237.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 404 Score = 85.9 bits (211), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 76/279 (27%), Positives = 125/279 (44%), Gaps = 56/279 (20%) Query: 5 VIALAWNLLAGFGGLIAIGQHAFIGVGAYSLFFLS------------------------- 39 ++AL N++ GF GL+ +G AF +GAY L+ Sbjct: 51 MLALGLNVVVGFAGLLDLGYIAFYAIGAYLTALLASPQFAVVLESFVNQYPAIGETLLWV 110 Query: 40 -------NSLDCAPWLLLPLATLSALAFALLSAWPMFRLSGPYFAVGTWVLAEMLRIAAQ 92 N + + W ++PLA L A F L P +L G Y A+ T E++RI Sbjct: 111 FGPEIAQNGIHLSLWAIVPLAALVAGFFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMN 170 Query: 93 N----TDVLGAGSGLSLDEMNNIDRWTRN--AGS-----------------YWAALALCI 129 N ++ G+++ + I + N AGS Y+ L LCI Sbjct: 171 NLNGPVNITNGPQGINMIDPIRIFGVSLNGEAGSRATVMIGDYAMPSVNAYYFLFLFLCI 230 Query: 130 SAVVVARMTLRGRIGLALMSVRDSEVAATACGVSVRKAKLWIWLIAAAMTGTAGALAYIN 189 + + ++ R+G A +++R+ E+AA A G++ R KL + + A+ G AGA+ Sbjct: 231 AIIFISVRLQNSRLGRAFVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGIAGAMFASF 290 Query: 190 TLQVTPDASFSLNWTAAAIFIAVLGGIGTLEGPFLGTLL 228 V+P+ SFSL + A + + VLGG+G + G LG ++ Sbjct: 291 QGFVSPE-SFSLTESIAVLAMVVLGGMGHIPGVVLGGII 328 >gi|152981595|ref|YP_001351787.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 343 Score = 71.6 bits (174), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 68/276 (24%), Positives = 129/276 (46%), Gaps = 15/276 (5%) Query: 5 VIALAWNLLAGFGGLIAIGQHAFIGVGAYSLFFLSNSLDCAPW-LLLPLATLSALAFALL 63 VI L +NLL G+GGL++ G FI +GAY+ + + ++L A +++ ++ Sbjct: 63 VILLGFNLLFGYGGLLSFGHALFIAIGAYAAAAMVAKTGMISFEMMLLTAVVASFIISIP 122 Query: 64 SAWPMFRLSGPYFAVGTWVLAEMLR-IAAQNTDVLGAGSGLSLD-------EMNNIDRWT 115 AW R +G +F + T + + + G SG+ + E++ D+ Sbjct: 123 IAWLASRFTGIFFGMLTLSFGMLFHSFLNKFYYITGGDSGMRVPRPSLFGMELDQFDKTA 182 Query: 116 RNAGS-YWAALALCISAVVVARMTLRGRIGLALMSVRDSEVAATACGVSVRKAKLWIWLI 174 G Y+ L + + V +R G+ LM+ RD+ + A GV +R + +++ Sbjct: 183 FLGGPFYYYCLVMVLLLTWVMWRIVRSPYGIHLMASRDNAIKALYLGVKIRSVRAIAFVV 242 Query: 175 AAAMTGTAGALAYINTLQVTPDASFSLNWTAAA--IFIAVLGGIGTLEGPFLGTLLYFFL 232 +A G + +NT P+ ++ WT + +F+AVLGG GP LG ++ L Sbjct: 243 SAVYASIGGVILGVNTGLADPELAY---WTHSGHLVFMAVLGGYQEFLGPVLGAFVFILL 299 Query: 233 RESFSAYGAWYFIGLGSLAIFAMLFSPGGAWAPIKR 268 ++ S+ ++ LG++ ++ PGG I++ Sbjct: 300 QDELSSLTQYWRFFLGAILAILVVVLPGGIMGAIRK 335 >gi|152981369|ref|YP_001353498.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 365 Score = 61.6 bits (148), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 8/205 (3%) Query: 70 RLSGPYFAVGTWVLAEMLRIAAQNTDVLGAGSGLSLDEMNNIDRWTRNAGS-----YWAA 124 R+ G YF++ T + + D G G + I +T S Y Sbjct: 155 RIKGVYFSIITQAMTFAFMLLFFRNDT-GFGGNNGFTDFKRILGFTITDPSTKAVLYLVT 213 Query: 125 LALCISAVVVARMTLRGRIGLALMSVRDSEVAATACGVSVRKAKLWIWLIAAAMTGTAGA 184 LA ++A+ V R + ++G L VRDSE G + KL++W ++A + G AGA Sbjct: 214 LAFLLAALFVCRAIVTSKLGRVLQGVRDSESRLMFIGYNPLWFKLFVWTLSAVVCGIAGA 273 Query: 185 LAYINTLQVTPDASFSLNWTAAAIFIAVLGGIGTLEGPFLGTLLYFFLRESFS-AYGAWY 243 L Y+ + + + S + + A +GG G+L GP +G L+ F+ A+ + Sbjct: 274 L-YVPQVGIINPSEMSPANSIEMVIWAAVGGRGSLLGPIIGAFTVNGLKSWFTAAFPDLW 332 Query: 244 FIGLGSLAIFAMLFSPGGAWAPIKR 268 LG + IF LF P G +K+ Sbjct: 333 LYALGLIFIFVTLFMPQGILGLVKK 357 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.326 0.138 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 645,861 Number of extensions: 24630 Number of successful extensions: 117 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 109 Number of HSP's successfully gapped: 6 Length of query: 308 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 225 Effective length of database: 914,170 Effective search space: 205688250 Effective search space used: 205688250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)