BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4311.p (236 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino a... 170 6e-44 gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino a... 163 1e-41 gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino a... 156 1e-39 gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino a... 139 1e-34 gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC tran... 135 2e-33 >gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 249 Score = 170 bits (431), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 94/233 (40%), Positives = 145/233 (62%), Gaps = 4/233 (1%) Query: 1 MLRVNGLSAYYGLFQALFGIDLYVRPGETVALIGANGAGKSSLLRAVVGSIRCGRSQIHL 60 ML++ ++ YG + I L V GE V LIGANGAGKS+ LRA+ G I + Sbjct: 16 MLKIEEITVRYGATTGINKISLEVHEGEIVTLIGANGAGKSTTLRAINGLEPLAHGSIRM 75 Query: 61 DGKAIGGESECAQLARGIALVPEGRKLFPSLSVLENLQVAA--RNGRAGVWT-VERVLRE 117 +G + G S + GI+ PEGR++FP L+V EN+++ A R +A V +ER+ + Sbjct: 76 NGHLVSGASPAEVIDHGISHCPEGRRVFPQLTVRENMEMGAYRRKDKAKVRDDMERMFDK 135 Query: 118 LPVLDQLKHRPATSLSGGQQQLVALSRALVTNPAYLLFDEVSLGLSPLAVNDVYALIRQI 177 P L + + A +LSGG+QQ++A++RAL++ P ++FDE SLGL+P V +++LIR+I Sbjct: 136 FPRLRERVQQVAGTLSGGEQQMLAIARALMSRPRLVMFDEPSLGLAPNIVEQIFSLIREI 195 Query: 178 KNEGISILLVEQNLHRALAESDRYYCIQKGRISLAGISSEADQD-QVTHAYFG 229 ++EG ++L+VEQN + ALA DR Y ++ G I G S+E + ++ AY G Sbjct: 196 RSEGTTVLIVEQNAYAALAMCDRGYLLENGHIVTQGSSAEMRANPEIRRAYLG 248 >gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 163 bits (412), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 89/235 (37%), Positives = 150/235 (63%), Gaps = 6/235 (2%) Query: 1 MLRVNGLSAYYGLFQALFGIDLYVRPGETVALIGANGAGKSSLLRAVVGSIRCGRSQIHL 60 +L+++GL YG +A+ G+DL V GE + LIGANGAGK++ L+A+ G++ R + H+ Sbjct: 5 VLKISGLKVAYGGIEAVKGVDLEVHKGELITLIGANGAGKTTTLKAITGTLPNCRVEGHI 64 Query: 61 D--GKAIGGESECAQLARGIALVPEGRKLFPSLSVLENLQVAA--RNGRAGVWT-VERVL 115 + G+ I G + + +A+VPEGR +F +S+ ENL + A R+ + G+ +++ Sbjct: 65 EYAGQPIKGLHSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTRDDKDGIAADIDKWF 124 Query: 116 RELPVLDQLKHRPATSLSGGQQQLVALSRALVTNPAYLLFDEVSLGLSPLAVNDVYALIR 175 P L + + A +LSGG+QQ++A++RAL+++P LL DE S+GLSP+ V ++ +IR Sbjct: 125 GVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPELLLLDEPSMGLSPIMVEKIFEVIR 184 Query: 176 QIKNEGISILLVEQNLHRALAESDRYYCIQKGRISLAGISSEADQD-QVTHAYFG 229 + +GI+ILLVEQN AL ++R Y ++ G +++ G + + D +V AY G Sbjct: 185 TVSAQGITILLVEQNAKLALQAANRAYVMESGLVTMHGDAQQMLSDPKVREAYLG 239 >gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 235 Score = 156 bits (394), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 89/232 (38%), Positives = 135/232 (58%), Gaps = 4/232 (1%) Query: 2 LRVNGLSAYYGLFQALFGIDLYVRPGETVALIGANGAGKSSLLRAVVGSIRCGRSQIHLD 61 L V GL+ Y L + + V PG+ ++GANGAGKS+L+R+++G + +I Sbjct: 4 LIVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEILWG 63 Query: 62 GKAIGGESECAQLARGIALVPEGRKLFPSLSVLENLQVAARNGRAGVWTVERVLRELPVL 121 GK + GE +A GI+ +PEGRK+FP ++V ENL + A + +R+ R + Sbjct: 64 GKNLAGEKTHNIIASGISCIPEGRKVFPRMTVAENLALGAFLESSSTVVRDRLARVYEIF 123 Query: 122 DQLKHRPAT---SLSGGQQQLVALSRALVTNPAYLLFDEVSLGLSPLAVNDVYALIRQIK 178 +LK R A ++SGG+Q +V++ R L+ P L+ DE SLGLSPL V + + +I+QI Sbjct: 124 PRLKERAAQLAGTMSGGEQAMVSIGRGLMAEPKLLVIDEPSLGLSPLYVKENFKVIKQIN 183 Query: 179 NEGISILLVEQNLHRALAESDRYYCIQKGRISLAGISSE-ADQDQVTHAYFG 229 GI++LLVEQN + LA S Y + +GR+ G + + D V AYFG Sbjct: 184 ALGITVLLVEQNARQTLAISHYGYVLSQGRVMAQGTAEALSSNDDVRSAYFG 235 >gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 232 Score = 139 bits (351), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 126/226 (55%), Gaps = 3/226 (1%) Query: 1 MLRVNGLSAYYGLFQALFGIDLYVRPGETVALIGANGAGKSSLLRAVVGSIRCGRSQIHL 60 ML+VN L+ YYG L GI L V G+ ++L+G NG GK++LL+ ++G + + L Sbjct: 1 MLQVNQLNQYYGAAHTLRGISLSVEKGKCLSLLGRNGVGKTTLLKCLMGVLPVAAGNVSL 60 Query: 61 DGKAIGGESECAQLARGIALVPEGRKLFPSLSVLENL--QVAARNGRAGVWTVERVLREL 118 DG+ I + A GIA VP+GR++F L+V ENL +A ++G+ V Sbjct: 61 DGRDITKLKPHQRAALGIAYVPQGREIFARLTVEENLLMGMATKSGKKASVIKGEVYELF 120 Query: 119 PVLDQLKHRPATSLSGGQQQLVALSRALVTNPAYLLFDEVSLGLSPLAVNDVYALIRQIK 178 PVL ++ HR LSGGQQQ +A++RAL+ P ++ DE + G+ P + D+ +I ++ Sbjct: 121 PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLR 180 Query: 179 NEG-ISILLVEQNLHRALAESDRYYCIQKGRISLAGISSEADQDQV 223 G I ILL EQ A +D + + +G + +G E D D V Sbjct: 181 ERGDIGILLCEQYFDFARELADTFVVLSRGEVVASGSQQEMDDDNV 226 >gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC transporter protein [Janthinobacterium sp. Marseille] Length = 231 Score = 135 bits (340), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 80/231 (34%), Positives = 128/231 (55%), Gaps = 4/231 (1%) Query: 1 MLRVNGLSAYYGLFQALFGIDLYVRPGETVALIGANGAGKSSLLRAVVGSIRCGRSQIHL 60 +L + L A+YG L GID+ ++ GE V+L+G NGAG+S+ ++A +G + I Sbjct: 4 LLEIKNLHAFYGKSHVLHGIDITIQSGEIVSLLGRNGAGRSTTVKAAMGMV-AATGTIRF 62 Query: 61 DGKAIGGESECAQLARGIALVPEGRKLFPSLSVLENLQVAARNGRAGVWTVERVLRELPV 120 GK I G +G+ V E R++FP+LSV +NL + A+ W+ + + R P Sbjct: 63 KGKEILGLPTYRIARQGLGYVAESREIFPTLSVAQNLVLGAQA--KSRWSADDMYRLFPR 120 Query: 121 LDQLKHRPATSLSGGQQQLVALSRALVTNPAYLLFDEVSLGLSPLAVNDVYALIRQIKNE 180 L + +H A LSGG+QQ++AL R L+ +P ++ DE + GL+P V V ++++ Sbjct: 121 LQERQHVQAGVLSGGEQQMLALCRTLMGDPELIMIDEPTEGLAPQMVALVANFLQELVQR 180 Query: 181 GISILLVEQNLHRALAESDRYYCIQKGRISLAGISSEADQD-QVTHAYFGV 230 G+S+LL+EQ L AL S R Y + G++ G + D V + GV Sbjct: 181 GVSVLLIEQKLAIALKISQRVYVMGHGQVVFEGSPQDLQADAAVRQEWLGV 231 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.137 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 550,641 Number of extensions: 22393 Number of successful extensions: 275 Number of sequences better than 1.0e-08: 54 Number of HSP's gapped: 207 Number of HSP's successfully gapped: 56 Length of query: 236 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 156 Effective length of database: 925,261 Effective search space: 144340716 Effective search space used: 144340716 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)