BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4310.p (249 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino a... 135 2e-33 gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino a... 127 5e-31 gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino a... 120 8e-29 gi|152981012|ref|YP_001355041.1| ABC-type transport system, ATPa... 110 6e-26 gi|152980928|ref|YP_001351786.1| branched-chain amino acid trans... 103 1e-23 >gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 256 Score = 135 bits (341), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/249 (34%), Positives = 129/249 (51%), Gaps = 14/249 (5%) Query: 1 MLLQLSDVRKSYRDNVVLHGATLSLAEGELVGMIGPNGAGKSTLFGTISGEHRCDAGKVL 60 ++L ++ V K + L + + +G++ G+IGPNGAGK+T F I+G ++ D G Sbjct: 5 IILNIAGVSKRFGGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSFE 64 Query: 61 LDGADITSFSAEQRCWAGIGRTFQIPRPFLGITVYENALVA-------ATFGAGLHGRAA 113 L G + + + AGI RTFQ R F +T EN ++ FGA H +AA Sbjct: 65 LAGKPYSPSAPHKVAKAGIARTFQNIRLFGEMTALENVMIGRHVRTHQGLFGAVFHHKAA 124 Query: 114 ATQ-------AVDAINQCGLAAWANRPAAQLTLLQRKRLELARAIATRPRLLLLDEIAGG 166 + A++ + G+A +A R A L+ ++RLE+ARA+AT P+LL LDE A G Sbjct: 125 RREEAEIRQRAMELLEFVGIAKFAERTARHLSYGDQRRLEIARALATDPQLLALDEPAAG 184 Query: 167 LTDGEVAELLLLVQSINRTGTAVLWIEHLVHALVAVVSRLVVLSEGRILDEGDPQTVLNS 226 + E L L+ I G +L IEH V ++ + R+ VL G+ + EG P V Sbjct: 185 MNATEKLGLRELLVKIKAEGKTILLIEHDVKLMMGLCDRITVLDYGKPIAEGVPADVQKD 244 Query: 227 RLVRETYLG 235 V E YLG Sbjct: 245 PAVIEAYLG 253 >gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 264 Score = 127 bits (320), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 83/230 (36%), Positives = 123/230 (53%), Gaps = 14/230 (6%) Query: 21 ATLSLAEGELVGMIGPNGAGKSTLFGTISGEHRCDAGKVLLDGADITSFSAEQRCWAGIG 80 A+ + G++V +IGPNGAGK+T + ISG + +G+V L G DIT + EQ G+ Sbjct: 28 ASFIVPAGKIVSLIGPNGAGKTTTYNVISGYMKPTSGRVKLFGHDITGMAPEQISQLGLV 87 Query: 81 RTFQIPRPFLGITVYENALVA-----------ATFGAGLHGRAAA---TQAVDAINQCGL 126 R+FQ F TV EN L A A R A TQA D + GL Sbjct: 88 RSFQRTSIFSACTVAENILTALHLKGQCGVLQALLRTQKFRREEADLRTQANDLLAFLGL 147 Query: 127 AAWANRPAAQLTLLQRKRLELARAIATRPRLLLLDEIAGGLTDGEVAELLLLVQSINRTG 186 +A AN A+ L+ +++ L + A+A +P++LLLDE A GL E +V+ I ++G Sbjct: 148 SARANTLASNLSYGEQRLLGVGLALAAKPKVLLLDEPAAGLNPSETEAFKEMVRRIGQSG 207 Query: 187 TAVLWIEHLVHALVAVVSRLVVLSEGRILDEGDPQTVLNSRLVRETYLGS 236 VL +EH +H ++++ +VVL+ GR++ G P + N V YLGS Sbjct: 208 VTVLLVEHDMHMVMSISDHIVVLNYGRLIATGSPSEIQNDPEVIRAYLGS 257 >gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 251 Score = 120 bits (301), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 80/243 (32%), Positives = 129/243 (53%), Gaps = 10/243 (4%) Query: 3 LQLSDVRKSYRDNVVLHGATLSLAEGELVGMIGPNGAGKSTLFGTISGEHRCDAGKVLLD 62 L+L +VRK + + ++ GA+L L +G+ + +IGPNGAGKSTLF ISG +G +LL+ Sbjct: 6 LELREVRKRFGNAEIICGASLQLPQGQRLALIGPNGAGKSTLFNLISGRFPLSSGDILLN 65 Query: 63 GADITSFSAEQRCWAGIGRTFQIPRPFLGITVYENALVAATFGAG--------LHGRAAA 114 G+ I Q G+ R+FQI F ++V+EN A + G L+G Sbjct: 66 GSSIAGQKPYQINRRGLSRSFQITNIFHRLSVFENLRCAVLWSLGYRYSFWQRLNGLQDV 125 Query: 115 TQ-AVDAINQCGLAAWANRPAAQLTLLQRKRLELARAIATRPRLLLLDEIAGGLTDGEVA 173 Q A + + GL N A L+ +++ LE+ IA ++LLLDE G++ E Sbjct: 126 NQRAEQVMEEIGLHKRRNVEADLLSYAEQRALEIGITIAGGAQVLLLDEPTAGMSRSESD 185 Query: 174 ELLLLVQSINRTGTAVLWIEHLVHALVAVVSRLVVLSEGRILDEGDPQTVLNSRLVRETY 233 + L++ I+ G +L +EH + + + R+ VL G I+ P + N+ LV++ Y Sbjct: 186 AAVELIRKIS-AGKTLLMVEHDMDVVFGLADRIAVLVYGEIIACDTPDNIRNNPLVQQAY 244 Query: 234 LGS 236 LG+ Sbjct: 245 LGT 247 >gi|152981012|ref|YP_001355041.1| ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 246 Score = 110 bits (276), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 120/238 (50%), Gaps = 6/238 (2%) Query: 3 LQLSDVRKSYRDNVVLHGATLSLAEGELVGMIGPNGAGKSTLFGTISGEHRCDAGKVLLD 62 L ++ ++KSY V+ L + GE++G++GPNGAGK+T F I G DAG++ LD Sbjct: 5 LIVNGLQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGRIELD 64 Query: 63 GADITSFSAEQRCWAGIGRTFQIPRPFLGITVYENALVAATF----GAGLHGRAAATQAV 118 G DI+ +R G+ Q F ++V +N G L+ A Q + Sbjct: 65 GVDISRLPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKALNS-AQLEQRL 123 Query: 119 DAI-NQCGLAAWANRPAAQLTLLQRKRLELARAIATRPRLLLLDEIAGGLTDGEVAELLL 177 D + + A L+ +R+R+E+ARA+AT PR +LLDE G+ V E+ Sbjct: 124 DTLLADLQIEKLRENQAMSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVIEIQR 183 Query: 178 LVQSINRTGTAVLWIEHLVHALVAVVSRLVVLSEGRILDEGDPQTVLNSRLVRETYLG 235 +V+ + G VL +H V + + R ++++G +L G P ++ + VR YLG Sbjct: 184 IVRFLKERGIGVLITDHNVRETLGICDRAYIINQGAVLASGRPDDIIANESVRRVYLG 241 >gi|152980928|ref|YP_001351786.1| branched-chain amino acid transporter ATP-binding protein [Janthinobacterium sp. Marseille] Length = 255 Score = 103 bits (257), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 67/224 (29%), Positives = 111/224 (49%), Gaps = 11/224 (4%) Query: 1 MLLQLSDVRKSYRDNVVLHGATLSLAEGELVGMIGPNGAGKSTLFGTISGEHRCDAGKVL 60 +LL + + + Y D + LH LS++ GE V ++GPNGAGK+TL ++G H+ G V Sbjct: 6 VLLHATQISRHYGDFIALHNVDLSVSRGEFVSVVGPNGAGKTTLVNVLTGLHQPTTGHVN 65 Query: 61 LDGADITSFSAEQRCWAGIGRTFQIPRPFLGITVYENALVAAT---------FGAGLHGR 111 DGA+I A G+ R FQ+ F +TV E V+A FG R Sbjct: 66 FDGANIAGVGAVDLATRGLARAFQLTSIFPELTVRETIAVSACSYLNQRWNGFGHLFGSR 125 Query: 112 AAATQAVDAINQCGLAAWANRPAAQLTLLQRKRLELARAIATRPRLLLLDEIAGGLTDGE 171 V + GL+ W + L +RK L++A A A P+++LLDE G++ + Sbjct: 126 KINDIVVRTADAFGLSPWLDTKGGSLPHGRRKLLDVASAFALHPKVMLLDEPTAGVSTAD 185 Query: 172 VAELL-LLVQSINRTGT-AVLWIEHLVHALVAVVSRLVVLSEGR 213 ++ L+++ G A++ +EH + + +R+V + G+ Sbjct: 186 KHGVMETLLRAAKHMGIEAIMLVEHDMDLVSRYSTRIVAMQGGK 229 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 552,886 Number of extensions: 21571 Number of successful extensions: 249 Number of sequences better than 1.0e-08: 55 Number of HSP's gapped: 197 Number of HSP's successfully gapped: 59 Length of query: 249 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 168 Effective length of database: 921,564 Effective search space: 154822752 Effective search space used: 154822752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)