BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4278.p
         (162 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981798|ref|YP_001355132.1| auxin efflux carrier [Janthinob...   226   6e-61
gi|152981736|ref|YP_001352356.1| AsnC family transcriptional reg...   127   5e-31
gi|152980927|ref|YP_001351836.1| Lpr family transcriptional regu...    72   3e-14

>gi|152981798|ref|YP_001355132.1| auxin efflux carrier
           [Janthinobacterium sp. Marseille]
          Length = 157

 Score =  226 bits (575), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 110/148 (74%), Positives = 126/148 (85%)

Query: 7   LDDLDRRILQALQTDASQTNQELAAQVHASPPTCLRRVKRLVEAGVIARQVALLDAAQLA 66
           LD+LDRRIL ALQ DASQTN +LAA VHASPPTCLRRVKRL++AGVI RQVA++    + 
Sbjct: 8   LDELDRRILNALQMDASQTNNDLAAAVHASPPTCLRRVKRLIDAGVIERQVAIVAPQMVG 67

Query: 67  STLTAIVEITLDRQGEEEQQHFEALVAGEAAVQQCYRVSPGPDFVLVVLVRDMPAYHALA 126
           + LT+IVEITLD+Q +E+Q  FEALVA E+AV QCYRVSPGPDFVLVV V DMPAYH LA
Sbjct: 68  AGLTSIVEITLDKQADEQQVEFEALVAQESAVLQCYRVSPGPDFVLVVQVADMPAYHVLA 127

Query: 127 HRLFASQRNVRNVRSYFSIHRSKFETAI 154
           HRLFA+  NVRNVRS+FSI+RSKFET I
Sbjct: 128 HRLFATHANVRNVRSFFSINRSKFETRI 155


>gi|152981736|ref|YP_001352356.1| AsnC family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 169

 Score =  127 bits (318), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 64/156 (41%), Positives = 92/156 (58%)

Query: 7   LDDLDRRILQALQTDASQTNQELAAQVHASPPTCLRRVKRLVEAGVIARQVALLDAAQLA 66
           LD +DR++L  LQ D     + LA +VH S PTCLRR++ + +AG+I+  VA++D   L 
Sbjct: 7   LDKVDRKLLNLLQKDNQTPTRTLADKVHISQPTCLRRIRDMRDAGIISADVAMIDPFALG 66

Query: 67  STLTAIVEITLDRQGEEEQQHFEALVAGEAAVQQCYRVSPGPDFVLVVLVRDMPAYHALA 126
             + A +E++L  Q +E  Q FE  +  EA V QCY VS   D+ LVV V DM AY+   
Sbjct: 67  YGMLAFLEVSLGNQSDEHMQEFEVRMGKEAEVMQCYFVSGDYDYFLVVHVVDMDAYYQFV 126

Query: 127 HRLFASQRNVRNVRSYFSIHRSKFETAILLDTDEAS 162
            R  +   NVR+ +S F + R+KF+T I  D   A+
Sbjct: 127 RRAISGSGNVRHFQSRFPMKRAKFDTRIAFDEKSAA 162


>gi|152980927|ref|YP_001351836.1| Lpr family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 155

 Score = 71.6 bits (174), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 72/143 (50%)

Query: 7   LDDLDRRILQALQTDASQTNQELAAQVHASPPTCLRRVKRLVEAGVIARQVALLDAAQLA 66
            D  DR +L+ LQ+    +N EL+ +V+ SPP C RRV+RL + GVI    A +DAA + 
Sbjct: 4   FDRYDRILLETLQSKGRASNVELSERVNLSPPQCYRRVQRLEQEGVIRGYSAQVDAAAIG 63

Query: 67  STLTAIVEITLDRQGEEEQQHFEALVAGEAAVQQCYRVSPGPDFVLVVLVRDMPAYHALA 126
             +TA V + + R+  ++ +  E  +     + +CY +S   D++L V+  D+ +  +  
Sbjct: 64  LGVTAFVNLNIAREQFKQVRELEKAIRQFPEILECYTISGDFDYLLKVVAVDLKSLSSFL 123

Query: 127 HRLFASQRNVRNVRSYFSIHRSK 149
                    V  VRS   +   K
Sbjct: 124 TDRLMQVPGVAGVRSMVCLEEIK 146


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.131    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 326,060
Number of extensions: 11501
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 3
Length of query: 162
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 86
Effective length of database: 940,049
Effective search space: 80844214
Effective search space used: 80844214
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)