BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4275.p
         (358 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980659|ref|YP_001353948.1| capsular polysaccharide synthes...    64   1e-11
gi|152979841|ref|YP_001353943.1| dTDP-D-glucose 4,6-dehydratase ...    55   5e-09

>gi|152980659|ref|YP_001353948.1| capsular polysaccharide synthesis
           enzyme [Janthinobacterium sp. Marseille]
          Length = 336

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 133/310 (42%), Gaps = 42/310 (13%)

Query: 4   FWRDKRVFITGHTG-FKGSWLTLWLHLMGARVSGYALPAPTNPSLFHLARLHNCVQTTTG 62
            + DK + ITG TG F  + L  +L      +  ++        +  +A  +N V+   G
Sbjct: 1   MFDDKVLMITGGTGSFGNTVLKRFLDTDVREIRIFSRDEKKQEDM-RIALGNNKVKFYIG 59

Query: 63  DVRDPRHLAETLAAVQPDIVFHLAAQPLVRDSYATPVDTYATNVMGTVHLLEAVRHTPSV 122
           DVRD   L + +  V  D VFH AA   V      P++   TNV+GT ++L A   +  V
Sbjct: 60  DVRDYDSLTQAMTGV--DFVFHAAALKQVPSCEFYPMEAVRTNVLGTENVLNAA-ISSKV 116

Query: 123 RSVVVVTSDKCYENREWLWGYREDDPMGGHDPYSSSKGAAELVTSAYRRSFFANQPDNQV 182
           + VVV+++DK               P+   +    SK  AE +  A  R+     P    
Sbjct: 117 KRVVVLSTDKAVY------------PI---NAMGISKAMAEKLVIAKSRTIAEGGP---- 157

Query: 183 GIASVRAGNVIGGGDFAADRLIPDFIRALEKEEPVVIRNPHAVRPWQFVLEPLSGYLQIA 242
            + S R GNV+     +   +IP FI  L+  +P+ + +P+  R +   LE     +  A
Sbjct: 158 VVCSTRYGNVMA----SRGSVIPLFINQLKSGQPITVTDPNMTR-FLMSLEDSVDLVLHA 212

Query: 243 QLLYEQGGAYAEGWNFGPADTDLQTVSQLCATFNHSLQKNDVGQVEVRLEGQARGP--HE 300
               EQG  + +     PA     TV+ L        Q N+    EV++ G   G   +E
Sbjct: 213 FEHAEQGDLFVQK---APA----STVADLAQALRELFQLNN----EVKVIGTRHGEKLYE 261

Query: 301 AALLRLDISK 310
           + + R +++K
Sbjct: 262 SLISREEMAK 271


>gi|152979841|ref|YP_001353943.1| dTDP-D-glucose 4,6-dehydratase
           [Janthinobacterium sp. Marseille]
          Length = 332

 Score = 55.5 bits (132), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 107/284 (37%), Gaps = 25/284 (8%)

Query: 63  DVRDPRHLAETLAAVQPDIVFHLAAQPLVRDSYATPVDTYATNVMGTVHLLEAVR----- 117
           DV D   +   L   +P  + H AA+  V  S   P +   TN+ GT  LLEA R     
Sbjct: 57  DVCDHDLMLSLLLKHKPSAIIHCAAESHVDRSIQGPAEFIRTNINGTFSLLEAARAYWTG 116

Query: 118 ---HTPSVRSVVVVTSDKCYENREWLWG-YREDDPMGGHDPYSSSKGAAELVTSAYRRSF 173
                      + V++D+ Y + E     + E      + PYS+SK A++ +  AY  ++
Sbjct: 117 LGAEDKLQFRFLHVSTDEAYGSLEAGDAPFSETTAYAPNSPYSASKAASDHLVRAYFHTY 176

Query: 174 FANQPDNQVGIASVRAGNVIGGGDFAADRLIPDFI-RALEKEEPVVIRNPHAVRPWQFVL 232
                   +   +    N  G   F  ++LIP  I  AL  +   +  +   +R W +V 
Sbjct: 177 -------GLPTLTTNCSNNYGPYHF-PEKLIPLVIANALAGKALPIYGDGRQIRDWLYV- 227

Query: 233 EPLSGYLQIAQLLYEQGGAYAEGWNFGPAD--TDLQTVSQLCATFNHSLQKNDVGQVEVR 290
               G   IA  L    G   E +N G  +  T+L  V  LC   +             +
Sbjct: 228 ----GDHCIALRLVLAKGVPGETYNIGAQNQKTNLDVVYTLCDILDELKPLASGKSYRQQ 283

Query: 291 LEGQARGPHEAALLRLDISKVRQRLDWIPKMELYTALELTAQWY 334
           +      P       +D  K+ + L W P     T L  T QWY
Sbjct: 284 VVYVTDRPGHDRRYAIDTGKIERELGWKPVEAFDTGLRKTVQWY 327


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.135    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 873,112
Number of extensions: 34677
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 2
Length of query: 358
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 274
Effective length of database: 910,473
Effective search space: 249469602
Effective search space used: 249469602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)