BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4274.p
         (318 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981386|ref|YP_001355128.1| hypothetical protein mma_3438 [...   342   2e-95

>gi|152981386|ref|YP_001355128.1| hypothetical protein mma_3438
           [Janthinobacterium sp. Marseille]
          Length = 317

 Score =  342 bits (876), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 155/265 (58%), Positives = 199/265 (75%)

Query: 41  LEKGIRRLTGRAIADFDMIRDGDVIMACMSGGADSYTMLDTLRYLQTVAPVKFEIIAVNL 100
           L K + R  G+AI DF+MI DGD +M C+SGG DSY +LD L  L+  AP+KF+I+AVNL
Sbjct: 34  LHKRLCRQVGQAIGDFNMIEDGDKVMVCLSGGKDSYALLDILMTLRERAPIKFDIVAVNL 93

Query: 101 DQKQPGFPEHILPEYFERIGVRYRIVEEDTYSIVKEKIAPGKTTCSLCSRLRRGILYRVA 160
           DQKQP FP+HILP Y +++ + + I  +DTYSIVK  I  GKTTCSLCSRLRRGILYRVA
Sbjct: 94  DQKQPNFPDHILPAYLKQLDIPFHIENQDTYSIVKRLIPEGKTTCSLCSRLRRGILYRVA 153

Query: 161 KELGATKIALGHHRDDILHTFMLNMFYGGKIKTMPPKLIADDGENVVIRPLAYVREPDIK 220
            ELGA KIALGHHRDDI+ TF LNMF+G KIK MPPKL +DDG+++VIRPLAYV+E D +
Sbjct: 154 DELGANKIALGHHRDDIMETFFLNMFFGAKIKGMPPKLQSDDGKHIVIRPLAYVKEADTE 213

Query: 221 KYAAAMQFPIIPCNLCGSQPNLQRQAMREMLNQWEKTNPLWIKSMFTAMANIAPSHMLDR 280
           +YA    FPIIPC+LCGSQ NLQR+ ++ ML +WEK  P  + ++F++++ + PSH++D+
Sbjct: 214 RYAEVKNFPIIPCDLCGSQENLQRKQIKGMLREWEKKFPGRVDNIFSSLSTVVPSHLMDK 273

Query: 281 SLFDFSSFKPGAGKEATGDTLFDRD 305
            LF F+  K      A GD  FD +
Sbjct: 274 ELFGFADLKATGEAMANGDIAFDEE 298


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 756,742
Number of extensions: 31048
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 235
Effective length of database: 914,170
Effective search space: 214829950
Effective search space used: 214829950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)